Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02338 ATGATAATATTTGACGGTCTGCTTTTACTCGTGGACAATATCCAAATACCAGGGCGGTCTTCTTTATATGGTCTGAGTTGGCCATTAAAAGGTGACTTTCTCAAGGAGTTCCTGTCCAGAGCCATCTGTTATCTCTCCCCTGCATATGCAACTCAAAGCTATCGGAAAAACGAAGTGGGCCGTCTTGGCTTGCCTCCGCTTCAATGCCCAACCATAATAATAATGAAAATTTTCATATCTCACGTGCCACTCCGCCCTTCCCTCACATGCCTCGCAGCAACTTTGCCATGGAGCCGGCAAAATTCCTATGCCTTTAAATTCTCGTACCGGGTCGCAGCCAGGGGAAGCTGTCAAAAGGAAGCTAATCAAATGGAAGAAGTTATCGTTGATGCCGACAAGCTTCGGGCCGAATTCCTTCGAGTTCTGCGTAGTAGACGATCTGGAGAAGTTCCGCTGAATGTGAAGCACACAGAGCCTGTTCTCAACCCTCTGATTCAGGAGGCCAACCCGCCAACCTTTAGTAAGGCGATGGCTTCTTGTCCAAAGGCAACTTCTAGCAATTTGAAGGATTTGCTTCACGAGGAAAATCTTCATCTGACTACGGAGGCAAGCTATACTCTCATACTTTTCACATTAACCTATGCTTATGCATCGAGGGGATATGTAGCTATTGCCATTGATTCTCGTTACCATGGTGAAAGGGCCAAGAACAAAACCACCTACCGTGATGCTCTTATTTCTTCATGGAAAAGAGGTGATACCATGCCGTTCATATTTGACACGGTATGGGACTTGATAAAATTGGCAGATTATCTGACGAAAAGGGAGGACATTGACCCATGTAGAATAGGAATTACTGGTGAATCACTTGGAGGCTTACCTCTTCACATTTTCATTGCAGGAATGCATGCATGGTTTGGTGCTGCTGCTGACACTCGCTATTCTGTGGTTGCCCCCATAATTGGTGTGCAGGTGGTTAACCCAAATGATGACATTCTGGATCTTTGTTTTCGATGGGCCATAAATAATGATAAGTGGCAGGCACGAGTTGAGAGTATAAAACCTGTTTTTGAGGAAGCACGAATCGAATTAGGCATGAATGGAATCAACAAAGAAGTGGTGAAGAAGGTCTGGAATAGGATTGCTCCTGGTTTAGATTCCCAATTTGACTCGATTTATTCAGTTCCAGCTATTGCACCACGTCCCTTGTTGTTATTAAATGGTGCAGAGGATCCTCGATGTCCAATTGCCGGTTTGGATGCTGCCGTATCAAGAACCCAGACAGCTTATCAGAAGTCTGGTTGTCCAGAAAATTTCAAGTTCGTCGCACAACCTGGAATTGGCCACGAAATGACACCAGAGATGGTAAAAGAAGCAAGTGATTGGTTTGACAGTAAACAAAGGTTTAATCATCATAGTAGTGTCGTAACTCGCAAGAGTAGGTTTCATGGACTTGAACTTTGCCAAGTCAACGAGATCACCAAACAGATTGTCCTCTGGCTTACAAGGCCTGTTGGGAGACATACTAGACAAGGCAGAAATCTGGCTGAGCTTCCCAAGGTGGTGGCGGAAGTGACTCGTTGTTTTGATAACCTGACCGAATACTTGGTTAGTCAAAAGGGACTAGGGCGTTCTGTTCAGATAAAGGAGTATTTGGCTGCTGCTCAGTCAAAGGAACAAGAGCCAGTGAAGTGTTCGCCACAGGAGGAATGTAGTCGTCACCACTCAGCAGGTCCAATTTGGGATCAAACTTAG 1755 45.19 MIIFDGLLLLVDNIQIPGRSSLYGLSWPLKGDFLKEFLSRAICYLSPAYATQSYRKNEVGRLGLPPLQCPTIIIMKIFISHVPLRPSLTCLAATLPWSRQNSYAFKFSYRVAARGSCQKEANQMEEVIVDADKLRAEFLRVLRSRRSGEVPLNVKHTEPVLNPLIQEANPPTFSKAMASCPKATSSNLKDLLHEENLHLTTEASYTLILFTLTYAYASRGYVAIAIDSRYHGERAKNKTTYRDALISSWKRGDTMPFIFDTVWDLIKLADYLTKREDIDPCRIGITGESLGGLPLHIFIAGMHAWFGAAADTRYSVVAPIIGVQVVNPNDDILDLCFRWAINNDKWQARVESIKPVFEEARIELGMNGINKEVVKKVWNRIAPGLDSQFDSIYSVPAIAPRPLLLLNGAEDPRCPIAGLDAAVSRTQTAYQKSGCPENFKFVAQPGIGHEMTPEMVKEASDWFDSKQRFNHHSSVVTRKSRFHGLELCQVNEITKQIVLWLTRPVGRHTRQGRNLAELPKVVAEVTRCFDNLTEYLVSQKGLGRSVQIKEYLAAAQSKEQEPVKCSPQEECSRHHSAGPIWDQT 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30583793 30593043 + Lsi04G023380.1 Lsi04g02338 662387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02338 584 MobiDBLite consensus disorder prediction 563 584 - -
Lsi04g02338 584 PANTHER ESTERASE YITV-RELATED 126 204 - -
Lsi04g02338 584 PANTHER ESTERASE YITV-RELATED 211 465 - -
Lsi04g02338 584 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 126 204 - -
Lsi04g02338 584 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 211 465 - -
Lsi04g02338 584 Gene3D alpha/beta hydrolase 180 490 IPR029058 -
Lsi04g02338 584 Pfam Prolyl oligopeptidase family 214 308 IPR001375 GO:0006508|GO:0008236
Lsi04g02338 584 SUPERFAMILY alpha/beta-Hydrolases 211 465 IPR029058 -
Lsi04g02338 584 Coils Coil 117 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02338 - - - csv:101220970 591.267
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g316 . Blo12g00759 . Bda03g00427 . . Bma04g00402 . . . Cma01g01432 . Car09g00568 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02338 Csa03g04559 Chy04g00143 . . . . . . Bpe04g00393 . . Sed04g0534 Cmo01g01481 Cmo09g00625 Cma09g00643 . . . . Cpe02g00516 Bhi09g02595 Tan01g3944 Cmetu04g1421 . Hepe01g2228 Mch11g0778 . . . . . . . . . . . Cme04g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006905 2 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02338 Lsi_Chr04 FPKM 7.389431 8.941444 5.965192 5.115405 5.185467 4.620041 4.751418 7.626868 7.457863 9.060547