Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02339 ATGGCTTCTCTGCATTCTGTTCTCAGGCCCATTCCTCGGGCAACGAACAGCCCTGCAGAGTTCCTTTACCACTGTCAAAGCTCAATGCGTTTTGCTCGATTTCGCTCTCTCTGTGTACACGAATTGCGCAATCCCCGACGGTTGTATTTCCGAGGATTCAGAATTATGGGTTCGATTGCAGATACTGTTGGTCATACTTCTGATGCTCCTCCAGTGCTTTCTAGTTCAGAGGTTATTGAAAGGTTAAGGGCAAGCCGAGAAAATCAAGAAAACCAGCAACAATACCTTGCCATGTTTTCCAGCGTTTTTGGAGGAATTACGACAGACCCAGCTGCTATGGTAATTCCAATTGATGACCACATGGTCCACCGGGGACATGGTGTTTTTGATACTGCTGCCATAGTGGATGGATATCTGTATGAGTTGGACCAGCACCTTGACCGCATTTTGAGATCAGCATCAATGGCAAAAGTTAGCCTCCCAGTTTCATACGATCGGGAGATGATTAGAAAGATACTCATAAGAACTGTGAGTGCTTCTAAGTGTAGGAATGGATCACTTCGATACTGGCTCTCTGCAGGACCGGGAGATTTTCAACTTTCTTCTTCTGGCTGTTATCAGCCAGCCCTTTATGCAGTTGTAATCCAAGGTAAGCCACTGTCTCGTTCAAAAGGCATCAAAGTCATAACATCATCAGTCCCGATGAAACCACCTCAATTTGCAATTATGAAAAGTGTAAATTACCTACCAAATGTTCTTTCAAAGATGGAAGCAGAAGAGAAGGATGCTTATGCATCCATTTGGTTGGACAGTGATGGATTCATTGCTGAAGGGCCTAATATGAACGTGGCTTTTATTACAAGCAATAAGGAATTTGTGATGCCTCACTTCAACAAAATTCTAAGCGGGTGCACGGCTAAGAGAATTATAAGTCTTGCTGAGCGGCTGGTGAAGGAGGGTCGGCTTCGAAGTATAAGCTGTGAAAATTTAACCATGGAGGAAGGGAAGAAGGCAGATGAGATGATGCTTATTGGAAGTGGAGTTCTTGTTTGCCCTGTACTGCAGTGGGATGAGCAGATTATTGGTGATGAAGAACGAGTTTACGATTTATCGCCTGGGGTAGTCGTGGTGGTGGAGATGGTGAATCCGATGGTTGAACGTGCCACGAGCGATATGTTGATCGGTCCAGACTGGGCCGCAAACATGGAGATATGTGATATGATCAACAGAGATCTTGGGCGAACAAAAGATGTTGTTAAAGGAATAAAGAAGCGCCTTGGAAGTAAGCACCCCAAAGTTCAGCTTCTTGTTCTAACACTCTTGGAGGCCATCATGAAGAATTGTGGGAACGTCAGTCATGCGCATGTGGCAGAGAAAGAAATTCCTCATGAGATGGTAAAAATTGTAAAGAAGAAGCCTGACCTTCGTGTCAAAGAGAAGATATTGCTCCTGATAGATTCCTGGCAAGAGGCTTTAGGAGGACCAACAGGAAGATATCCACAATATTATGCTGCTTATGAAGAACTATTGCGTGCTGGGGCAGTTTTTCCCCATAAATCTGAAACGCCAGCACCTGTTCTCACACCTCCACAAAGACAACAGGTGGGATTGTATAATCAGAATGTGCACAATCCTGATTATCAGCAAGATGCTCCAGGATCCTCAAGGGATGTTAAATTATCAGCCTTAAGCTTGAGTGAGATCCAACTTGCAAAGGGAGTTGTGGATGTCCTTACAGAAATGCTAAATGCATTAGATCCTGGAAACAAGGAGGATATTAAGCAAGATATCGTTGTTGACTTGGTAGAACAATGCCATAGTTACAAGCAGAGAGTAGTTCATCTTGTGAATTCAACTTCTGGAACCGGGGTGCGTGTAATTAGGGATGAATCATTGCTCTGCCAAGGATTGTCACTTAATGATGATTTACAACGTGTACTTTCAAAGCATGAAGCCATTGCTTCAGGATCTTCTGTTCAGAAAGGGAAACCCAAGCCCGAATTGGTTGGAGCACTTCGTGATGATCATCGTCCTCTTGATAACACTGGAGATAACAGCCAACAACCTGAGAGAAAGTTGGCCTCCAATACTACTGGTTCAAGCACACGAACAGTAAATGAGTCATTGCATGCATCTCCCTCCATTGGTGGTACAGCTCCTCCAGCTAAGTTTGATCCCAAATTGGACCTGCTGAGTGGTGACGACTACATTCCTCCTGTGGCGAACACTTCACTGGCTCTTGTTCCTTTGACTGAGCAGCAGCCAAATACTCCTTTATCTGAACAGAACGCCCTAGTCCCTTTTGACCTGCATCATGACAGCAACCAAACAACTAATGTTGCTGATACCCTGTCCGGTAATCCTGGATATCAAAGCCATGCTTCTGTCTCAAACTTCCACCAGCGCCAGGATTTTCATTTTCCGCAGGGTGGACTGAGACAACCCCTTGCTCCACATAATGGTTATCAAAACAACGAGTCACTTCCGCCACCACCTTGGGAAGCTCAGCCTGTGGATGATAATGGTTCGGTAGTAGGTGATGAGTATCCCCATTCAATGAAGTTGACTCAGGTTGTTTTCACGCATGTGCAGAATGGTCTGTATCCTCAAGGACCTCAACCAATTGCAAATGACCAAGTTGTAGGTGTGTACATCCAGCCAATTGTAGGCAGCCAGATTTCAGCCCTTAATAGCCAGTTTAATCTTAGCAATCAGCTGGATTCGGCCTCTCGAACATTCCACGGAGGGCCTTACGGAGCCATCGTTTCACGACAGACTGGGCAAATTGCAACTCTGTATCCTTTGCAAATGTTTGGCAACCAATTCTCTGGCTATGGCCACATCCAACCACAGGGAACACAGTATCTGGAGCAGCGTGCGTATGTTAGTGATGATAATGGCATAAGAAATTCATCCTACCAGATTTCTGCCTTGTCTAGTATGTCTCCCAACAGGCCTTGTAAGCCAGAGGACAATCTGTTTGGTGATCTCGTTGACTTGGCAAAGTTCAAGTCCATGAAACCTACTCCTGCAGTTGCTGGTAGCGAGTGA 3051 45.17 MASLHSVLRPIPRATNSPAEFLYHCQSSMRFARFRSLCVHELRNPRRLYFRGFRIMGSIADTVGHTSDAPPVLSSSEVIERLRASRENQENQQQYLAMFSSVFGGITTDPAAMVIPIDDHMVHRGHGVFDTAAIVDGYLYELDQHLDRILRSASMAKVSLPVSYDREMIRKILIRTVSASKCRNGSLRYWLSAGPGDFQLSSSGCYQPALYAVVIQGKPLSRSKGIKVITSSVPMKPPQFAIMKSVNYLPNVLSKMEAEEKDAYASIWLDSDGFIAEGPNMNVAFITSNKEFVMPHFNKILSGCTAKRIISLAERLVKEGRLRSISCENLTMEEGKKADEMMLIGSGVLVCPVLQWDEQIIGDEERVYDLSPGVVVVVEMVNPMVERATSDMLIGPDWAANMEICDMINRDLGRTKDVVKGIKKRLGSKHPKVQLLVLTLLEAIMKNCGNVSHAHVAEKEIPHEMVKIVKKKPDLRVKEKILLLIDSWQEALGGPTGRYPQYYAAYEELLRAGAVFPHKSETPAPVLTPPQRQQVGLYNQNVHNPDYQQDAPGSSRDVKLSALSLSEIQLAKGVVDVLTEMLNALDPGNKEDIKQDIVVDLVEQCHSYKQRVVHLVNSTSGTGVRVIRDESLLCQGLSLNDDLQRVLSKHEAIASGSSVQKGKPKPELVGALRDDHRPLDNTGDNSQQPERKLASNTTGSSTRTVNESLHASPSIGGTAPPAKFDPKLDLLSGDDYIPPVANTSLALVPLTEQQPNTPLSEQNALVPFDLHHDSNQTTNVADTLSGNPGYQSHASVSNFHQRQDFHFPQGGLRQPLAPHNGYQNNESLPPPPWEAQPVDDNGSVVGDEYPHSMKLTQVVFTHVQNGLYPQGPQPIANDQVVGVYIQPIVGSQISALNSQFNLSNQLDSASRTFHGGPYGAIVSRQTGQIATLYPLQMFGNQFSGYGHIQPQGTQYLEQRAYVSDDNGIRNSSYQISALSSMSPNRPCKPEDNLFGDLVDLAKFKSMKPTPAVAGSE 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30591686 30602281 - Lsi04G023390.1 Lsi04g02339 662388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02339 1016 MobiDBLite consensus disorder prediction 654 721 - -
Lsi04g02339 1016 Gene3D - 560 662 IPR038425 -
Lsi04g02339 1016 PANTHER TARGET OF MYB PROTEIN 1 380 1009 - -
Lsi04g02339 1016 SUPERFAMILY ENTH/VHS domain 382 517 IPR008942 -
Lsi04g02339 1016 Gene3D - 378 524 IPR008942 -
Lsi04g02339 1016 Pfam GAT domain 574 655 IPR004152 GO:0035091|GO:0043130
Lsi04g02339 1016 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 104 364 IPR036038 GO:0003824
Lsi04g02339 1016 PANTHER TOM1-LIKE PROTEIN 380 1009 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lsi04g02339 1016 CDD GAT_GGA_like_plant 567 653 - -
Lsi04g02339 1016 ProSiteProfiles VHS domain profile. 388 517 IPR002014 GO:0035091|GO:0043130
Lsi04g02339 1016 ProSiteProfiles GAT domain profile. 559 655 IPR004152 GO:0035091|GO:0043130
Lsi04g02339 1016 Pfam Amino-transferase class IV 127 355 IPR001544 GO:0003824
Lsi04g02339 1016 Gene3D - 219 376 IPR043132 -
Lsi04g02339 1016 Pfam VHS domain 381 492 IPR002014 GO:0035091|GO:0043130
Lsi04g02339 1016 SUPERFAMILY GAT-like domain 521 656 - -
Lsi04g02339 1016 MobiDBLite consensus disorder prediction 667 681 - -
Lsi04g02339 1016 Gene3D - 74 216 IPR043131 -
Lsi04g02339 1016 CDD VHS 386 511 - -
Lsi04g02339 1016 MobiDBLite consensus disorder prediction 805 836 - -
Lsi04g02339 1016 SMART VHS_2 381 513 IPR002014 GO:0035091|GO:0043130
Lsi04g02339 1016 MobiDBLite consensus disorder prediction 682 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02339 - - - csv:101216627 1004.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02339 Lsi08g01095 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02339 Lsi-Chr4:30591686 Lsi11g00996 Lsi-Chr11:16758360 1.00E-84 dispersed
Lsi01g02010 Lsi-Chr1:27440455 Lsi04g02339 Lsi-Chr4:30591686 5.84E-46 transposed
Lsi04g02043 Lsi-Chr4:27514150 Lsi04g02339 Lsi-Chr4:30591686 1.41E-108 transposed
Lsi08g00505 Lsi-Chr8:12963820 Lsi04g02339 Lsi-Chr4:30591686 4.84E-64 transposed
Lsi11g00520 Lsi-Chr11:5478031 Lsi04g02339 Lsi-Chr4:30591686 3.11E-17 transposed
Lsi04g02339 Lsi-Chr4:30591686 Lsi08g01095 Lsi-Chr8:19560461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014022 0 2 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02339 Lsi_Chr04 FPKM 5.484702 5.811625 1.988513 1.40505 13.604586 13.52879 15.621637 0.869056 0.676373 0.555208