Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02348 ATGGAAAAAACAGCTGATTTCTCTCGTTGTGGTTTTATGAGAGGGATTTTCCAGCCCCGGTGCAAATGGTTGAAAAAATCCTCTGTTCATTCATTACCCACAAACACCACCGAAAATGTCAACTTAAAAGTACCCAAGATTGATAACCCAACAAGGCAAAGCCGGAGCTCTGTTTCCGACGATGCACCAACAGCCAGAATTTCAGTGGAACAAGATCAAAAGACTCCCAAAATGGCCACTTTAGACCAACCAAGGCCTTCAATTTCTCAACATAAGAATCAAAGTAGAAGGCCTTCCGATGCTGCAAGAAGCTCCACATCGTCTTCCAATGGCTCTGCACAAGCCAGAGCTATGAATTCTCATCAACAATTAAACGAACCCAAACCCCACATCCGAATATCTTTAAGTAATGGCACGGTTTTGGGTAATTTGAAGCAAGCTGGAAGTGGGAATTTGTCGGCAAACAATAGTCCAAGGCTGAAAGAGATGAACTCGAGTCCAAAACTTGGAGGAAGTAGTACTGGTAGTAACAACATGGGGAACATTATTCGGAGAAATTCATGTGAATTTCGACAGATTCAAGGTTTGAGAGGTAGATTAGAGCCGGATGTTTTGAAATCCATGGGAAATGAAGCTTATAAAAAGGGGAACTATGAAGAAGCATTGGCTTTGTATGACAGAGCAATAGATTTGGATTCAGAGAATGCTGTTTATTATAGCAACAAGGGGGCTGCTCTGATTGCCTTAGATCGTTTGATGGAAGCCATTGAAGAATGCAAAAAGGCATTAAAGATTCAGCCTTCTTATCAAAGAGCCCATCATCGTCTAGCCACGACTTATCTCAGAATTGGAGAGCCTGAGAAAGCATTGGATCACATGGAACAATCTGGTCCTTACAGTGGTATAAACGACATTAACAAAGCTCGTACTCTTCAGAATTGTCTGAGTAGGTGTAATGAAGCAAGAAAGTTACAAGAATGGGACACTCTGTTAAAGGAAACCCAATATGCAATTTCCTCTGTTTCTTATTCAGCTTATAAACTCTATGCTTTACAAGCTGAGGCTTTATTGAAACTCCATAGACATCAGGAGGCATATGCCATTTACCAAAAGGGTCGAACCCTGAGAACTAATTCTTTAATTAAGTCGTTTAGTCTATCTGACAGTGCCCTTCTTTTATCCATTGAGGCACAAGTTTACATGACCATGGGCAGGTTTGAGGAAGCAGTGGCAGCAGCAGAACAATCAACACAACTTGATCCAACCAACAGAGAAGCAAGTAGAGTTGCAAAATGGGCTAAAGTTGTTTCATCAGCTCGATTGAGAGGCAATCTACTTTTCAAGGAATCAAGATTCACTGAAGCCTGTATTGCATATAGTGAAGGACTAGAAAACGACCCATATAACTCCATTTTGTTATGCAATCGAGCCGCTTGTCGATCGAAGCTCAGGCAATATGAGAAAGCTGTTGAAGATTGCACTGCTGCTCTTCAAGCACAACCATCTTACAGCAAAGCCAGACTCCGCAGGGCTGATTGCAATGCTAAAATGGAAAGATGGGAGGCTTCAATTCAAGATTATGAGGTTTTGATAAGAGAAACACCAGGAAATGAAGAAGTAGGGAGAGCCCTGTTTGAGGCACAGCTTCAACTCAGAAAGCAACATGGGGAAGATGTCAAAGACTTGAAATTTGGCTCCAATTTGGTGTCTATTTCTAGCTATGAGCGTTTTAGGCATCTTGTTACTTCTCCTGGGATGTGTGTTGTTCTGTTCTGCAACAAAGGCAACCAAAAACAGGGGATAGAAGTGTTTGAGCAAGTTTACAAGAGGTTTCCATCAGTTAACTTTCTCAAGGTGGAGATAGAAGACCATCCTTATTTGGCAAAGTTGGAGAATGTGAGCTCCATTCCAGCTTTTAAAATATACAGAAATGGAACAATAGTGAAGGAGATTCCAGCTTCCAAGCCCCATTCATTAGAAAGTTTAGTGAAGTTGTACAGCAGTTGA 2007 41.45 MEKTADFSRCGFMRGIFQPRCKWLKKSSVHSLPTNTTENVNLKVPKIDNPTRQSRSSVSDDAPTARISVEQDQKTPKMATLDQPRPSISQHKNQSRRPSDAARSSTSSSNGSAQARAMNSHQQLNEPKPHIRISLSNGTVLGNLKQAGSGNLSANNSPRLKEMNSSPKLGGSSTGSNNMGNIIRRNSCEFRQIQGLRGRLEPDVLKSMGNEAYKKGNYEEALALYDRAIDLDSENAVYYSNKGAALIALDRLMEAIEECKKALKIQPSYQRAHHRLATTYLRIGEPEKALDHMEQSGPYSGINDINKARTLQNCLSRCNEARKLQEWDTLLKETQYAISSVSYSAYKLYALQAEALLKLHRHQEAYAIYQKGRTLRTNSLIKSFSLSDSALLLSIEAQVYMTMGRFEEAVAAAEQSTQLDPTNREASRVAKWAKVVSSARLRGNLLFKESRFTEACIAYSEGLENDPYNSILLCNRAACRSKLRQYEKAVEDCTAALQAQPSYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAQLQLRKQHGEDVKDLKFGSNLVSISSYERFRHLVTSPGMCVVLFCNKGNQKQGIEVFEQVYKRFPSVNFLKVEIEDHPYLAKLENVSSIPAFKIYRNGTIVKEIPASKPHSLESLVKLYSS 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30662000 30665918 + Lsi04G023480.1 Lsi04g02348 662397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02348 668 SMART tpr_5 202 235 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 470 503 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 504 537 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 346 379 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 390 423 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 236 269 IPR019734 GO:0005515
Lsi04g02348 668 SMART tpr_5 436 469 IPR019734 GO:0005515
Lsi04g02348 668 Gene3D Glutaredoxin 562 667 - -
Lsi04g02348 668 SUPERFAMILY TPR-like 202 426 IPR011990 GO:0005515
Lsi04g02348 668 Pfam Tetratricopeptide repeat 397 470 - -
Lsi04g02348 668 Pfam Tetratricopeptide repeat 482 537 - -
Lsi04g02348 668 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Lsi04g02348 668 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 666 IPR044534 -
Lsi04g02348 668 SUPERFAMILY TPR-like 439 554 IPR011990 GO:0005515
Lsi04g02348 668 MobiDBLite consensus disorder prediction 40 128 - -
Lsi04g02348 668 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515
Lsi04g02348 668 ProSiteProfiles TPR repeat region circular profile. 202 235 - -
Lsi04g02348 668 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 4 666 - -
Lsi04g02348 668 Pfam TPR repeat 209 246 - -
Lsi04g02348 668 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Lsi04g02348 668 MobiDBLite consensus disorder prediction 142 180 - -
Lsi04g02348 668 Gene3D Tetratricopeptide repeat domain 201 556 IPR011990 GO:0005515
Lsi04g02348 668 CDD TRX_family 575 664 - -
Lsi04g02348 668 SUPERFAMILY Thioredoxin-like 559 655 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02348 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 1111.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02348 Lsi-Chr4:30662000 Lsi07g00173 Lsi-Chr7:1853095 1.23E-140 dispersed
Lsi04g02348 Lsi-Chr4:30662000 Lsi11g01649 Lsi-Chr11:24801333 1.16E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02348 Lsi_Chr04 FPKM 28.387434 26.893988 31.1908 31.894964 26.563663 19.855396 27.485199 128.040085 130.617981 140.466461