Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02349 ATGAGTGACAACAGAGAGAATTCAGATGATGAGAAAATCGAAACAAAGGAGATGGATGATAGAAGTTCAACTCCAGATAATCAAGTACAGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCAAAACAAAAACTCTACAAAGAAATCAAATCTGCAGTCAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTTATTCAAAGATCAAACCAAGAGGCGGAAATTTATCCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACTATTGCCAGTCTTTGCATTCCGCAGGATATTGGGTATGCCAAGCTTGCAAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACACTGCTTCAACAGGAAATCGATTTTGCTACGAATGCAGAAGACTACAGGCGGCTGGCATTTACGGCTACATTCTTTGCAGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATAAAGAAATTCACAAAGAAAACAGATATTATATCTGTTGTGGAGTCGGTATTTGGCACGATCCAACACGGATGGAACTGGCAGACAATAGTGATTGCTGCAACCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGTAATGTCTCTTACTTCCATCACCAATAATATAAAACTCATTTATTTCTCTACTGCCCCTCTTCTTATGATTGTCCTCATTGATATGGAGCAGGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTGTCTACCCTTTTGGTTTACATTACTCGTGCAGATAAGGAAGGTGTTGCAACTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTAAAAGACTTATATTTATCAGGCCAATACCTTCTAAAAGGGTTGAAGATTGGTATCGTGGCAGGAATGGTAGCACTGACGGAAGCCGTTGCGATTGGAAGAACATTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACAGGATCATTCTCTCGATCCGCCGTAAATTACATGGCCGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACATTGGCATTCCTCACCCCACTTTTCAAATATACTCCAAACACGATTCTGTCTGCCATCATCATATCTGCTGTGATCAACCTGGTCGACTTCCACGCTGCGAAACTGATTTGGAAGATAGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCCTCGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTATCCATTTCTTTCGCCAAAATCCTTCTTCAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCAAGGACGGTCGTTTACCGAAACATACTGCAATATCCTGAAGCAACCAAGGTTCCTGGCGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGATATGTCACCTGTTACTGACATAGACACCAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAAAGAGAAATTCAGCTCATTCTAGCAAATCCGGGGCCGGTGGTGATAAACAAACTTCACGCGTCAGAGTTTGTAGATTTGATAGGCCAAGACAATATCTTCCTCACAGTAGCAGATGCAGTCTCATCTTGTAATCCAAAGATAATGAACGACGTTTGA 2079 41.9 MSDNRENSDDEKIETKEMDDRSSTPDNQVQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRLFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQQEIDFATNAEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVVESVFGTIQHGWNWQTIVIAATFLGFLLFAKFIVMSLTSITNNIKLIYFSTAPLLMIVLIDMEQGKKNKRLFWVPAIAPLISVVLSTLLVYITRADKEGVATVKHIEKGINPPSVKDLYLSGQYLLKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGVMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNTILSAIIISAVINLVDFHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTVVYRNILQYPEATKVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVDMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDNIFLTVADAVSSCNPKIMNDV 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30676981 30682294 + Lsi04G023490.1 Lsi04g02349 662398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02349 692 TIGRFAM sulP: sulfate permease 299 680 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi04g02349 692 Pfam Sulfate permease family 98 509 IPR011547 GO:0016021
Lsi04g02349 692 PANTHER SULFATE TRANSPORTER 300 691 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi04g02349 692 PANTHER SULFATE TRANSPORTER 22 306 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi04g02349 692 MobiDBLite consensus disorder prediction 1 32 - -
Lsi04g02349 692 Gene3D STAS domain 556 688 IPR036513 -
Lsi04g02349 692 SUPERFAMILY SpoIIaa-like 563 685 IPR036513 -
Lsi04g02349 692 CDD STAS_SulP_like_sulfate_transporter 562 677 - -
Lsi04g02349 692 ProSiteProfiles STAS domain profile. 561 684 IPR002645 -
Lsi04g02349 692 PANTHER SULFATE TRANSPORTER 1.3 22 306 - -
Lsi04g02349 692 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Lsi04g02349 692 Pfam STAS domain 562 680 IPR002645 -
Lsi04g02349 692 PANTHER SULFATE TRANSPORTER 1.3 300 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02349 Lsi-Chr4:30676981 Lsi09g00959 Lsi-Chr9:12534076 0 dispersed
Lsi04g02349 Lsi-Chr4:30676981 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02349 K17470 - csv:101207370 1190.25