Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02353 ATGGCAGCTGCCATGGATTTCTACAATGAAGGACCACAAACATACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCCTCTATCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCTTCACCAACACCCTATCTCCCTCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCACTTTGTACTCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCAGTTATCATCACCTCAAATCTCCCATTCCCAACCTCAAATCGATCTTTTTCATAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAAACACCATCCTGCTATGGACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCCGTCCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTACAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCCGAGATCCGGCTGCCGAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCCGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTTAATTTCCCAAACCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGGGAGTACAGACCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTAGTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCATGGCTGCGGAAACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCGATGCTAGAGAAATATCCTTCTGAGATTGATTGGGCATCGATCTTACCTTAA 1095 48.77 MAAAMDFYNEGPQTYHFGGELMEAIVPFIKVASSSASSISTNFPSSSSSSSSPTPYLPPPYSSSFNSHLNFSHSTPQQSTLYSNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHQLSSPQISHSQPQIDLFHNQTPLAFAWGQQNHQTPSCYGQQTPSFLSPKPVPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQAICDNLAKPQKQGKSKKPVSAAKKSRSQSCSMAAETAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30737737 30738831 + Lsi04G023530.1 Lsi04g02353 662402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02353 364 MobiDBLite consensus disorder prediction 274 293 - -
Lsi04g02353 364 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700|GO:0006355
Lsi04g02353 364 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Lsi04g02353 364 Pfam AP2 domain 181 229 IPR001471 GO:0003700|GO:0006355
Lsi04g02353 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 362 - -
Lsi04g02353 364 CDD AP2 179 239 IPR001471 GO:0003700|GO:0006355
Lsi04g02353 364 SUPERFAMILY DNA-binding domain 180 237 IPR016177 GO:0003677
Lsi04g02353 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 362 - -
Lsi04g02353 364 SMART rav1_2 180 243 IPR001471 GO:0003700|GO:0006355
Lsi04g02353 364 Gene3D AP2/ERF domain 180 238 IPR036955 GO:0003700|GO:0006355
Lsi04g02353 364 MobiDBLite consensus disorder prediction 306 327 - -
Lsi04g02353 364 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00754 Lsi-Chr1:5900067 Lsi04g02353 Lsi-Chr4:30737737 1.38E-75 dispersed
Lsi04g02353 Lsi-Chr4:30737737 Lsi10g00883 Lsi-Chr10:13136227 2.92E-33 dispersed
Lsi04g02353 Lsi-Chr4:30737737 Lsi08g00953 Lsi-Chr8:18020199 6.78E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25265 PF00847 AP2 2.80E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02353 K09286 - csv:101214560 596.66