Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02366 ATGATCTTGGTGGTACAAGCCGGAGTGTATTATTCGCGAGTTGAACATAAACTCGGAGGAGGAAAGAAAGTGACGCGGGTGGAGGTGACTCTAGATGGCGGGGAGTCGTGGCGTCTGTGCGACTTGGACCGTCCTGAAAAGCCTACAAGATACGGCAAGTATTGGTGTTGGTGTTTCTGGTCACTGGAGGTTGAGGTTCTTGATTTGCTTGCTGCTAAAGAAATTGCAGTCCGCGCCTGGGATGAGACCTTCAACACTCAGCCTGAGAAACTCATCTGGAATCTCATGGGAATGATGAACAATTGCTGGTTTCGGGTGAAAAGCAACATGTGCAAACCTCATAAGGGAGAGATCGGAATCGTTTTCGAACACCCAACTGTGCCCGGCAACCAATCCGGCGGGTGGATGGCTAAAGAGAAGCATCTCGAGATATCCACCGACACCAATCAAACAATGAAGAAAAGTGTGTCCTCGCCCTTCATCAACACCGCCTCAAAGACATACTCCATTTCTGATGTCAAAAAACACAACTCAGAACAATCCGCCTGGATCGTCGTCCACGGCCATGTTTACGACTGCAGCTACTTCCTCAAAGACCATCCCGGCGGCACCGACAGCATTCTCATCAATGCCGGTACCGACTGCACAGAGGAATTCGATGCCATCCACTCCGACAAAGCCAAAAAAATGCTAGAGGAGTACAGAATCGGCGAGTTGATCACCACGGGTTACGCTTCGGATTCATCGCCTAACAACTCCGTCCATGGGACTTCTAACAATAACCTCCCTCACTTAGCTCCAATAACAGAAACAAGGCGCGTGGCTTTAATCCCGCGTGAGAAAATCCCCTGCAAATTAATCTCCAAAACCTCAATCTCACACGACGTCAGACGGTTCAGATTCGCGTTGCCTTTAGAGGATCAAGTCCTTGGTTTACCAGTGGGGAAACACATATTCCTATGCGCAAAAATAGACGGAAAGCTCTGCATGCGGGCCTACACACCAACGAGCGGCGTCCATGAAGTGGGCTACTTCGACCTAGTAGTCAAAATCTATTTCAAAAACGTGCACCCAAAATTCCCCAACGGAGGACTCCTTTCCCAGTATTTGGATTCCCTCCCGCTTGGATCCGAACTACAAGTAAAAGGCCCATTGGGCCACATTGAATACACCGGGCGCGGCAACTTTCTGGTGGACGGCAAAGTAAAGAAGGCGAAGAAGCTAGCCATGGTTGCCGGCGGAACGGGAATAACACCGGTATATCAAGTGGCGCAGGCGGTTCTCAAGGATCCTGAGGATGAAACAGACATGTTTTTGGTATATGCGAACAGGACGGAGAATGATATTCTTCTCAAAGAAGAGTTGGATGAGTGGAGTAAGAACGATAAGAGGTTTAAAGTATGGTATGTTGTAAGTGAGAGTGTAAGGGAAGGTTGGGAATTCAGTGTGGGAGTGATAACAGAGACTATCATGAGGGAGCATCTTCCAAAAGGTTCGGCTGATACATTGGCCTTGGCTTGTGGACCTCCCCCGATGATTAAGTTTGCTGTGCAACCCAACTTGGAGAAAATGAACTACGACACTACTAATTCATTGTTGGTGTTTTAG 1608 48.51 MILVVQAGVYYSRVEHKLGGGKKVTRVEVTLDGGESWRLCDLDRPEKPTRYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKSNMCKPHKGEIGIVFEHPTVPGNQSGGWMAKEKHLEISTDTNQTMKKSVSSPFINTASKTYSISDVKKHNSEQSAWIVVHGHVYDCSYFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYASDSSPNNSVHGTSNNNLPHLAPITETRRVALIPREKIPCKLISKTSISHDVRRFRFALPLEDQVLGLPVGKHIFLCAKIDGKLCMRAYTPTSGVHEVGYFDLVVKIYFKNVHPKFPNGGLLSQYLDSLPLGSELQVKGPLGHIEYTGRGNFLVDGKVKKAKKLAMVAGGTGITPVYQVAQAVLKDPEDETDMFLVYANRTENDILLKEELDEWSKNDKRFKVWYVVSESVREGWEFSVGVITETIMREHLPKGSADTLALACGPPPMIKFAVQPNLEKMNYDTTNSLLVF 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30810134 30812218 + Lsi04G023660.1 Lsi04g02366 662415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02366 535 CDD cyt_b5_reduct_like 284 527 - -
Lsi04g02366 535 Pfam Mo-co oxidoreductase dimerisation domain 19 108 IPR005066 GO:0016491|GO:0030151
Lsi04g02366 535 Gene3D - 18 159 - -
Lsi04g02366 535 PANTHER NITRATE REDUCTASE 14 535 - -
Lsi04g02366 535 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 379 529 IPR039261 -
Lsi04g02366 535 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 164 245 IPR036400 -
Lsi04g02366 535 Pfam Cytochrome b5-like Heme/Steroid binding domain 171 239 IPR001199 -
Lsi04g02366 535 SUPERFAMILY Riboflavin synthase domain-like 271 391 IPR017938 -
Lsi04g02366 535 SUPERFAMILY E set domains 19 107 IPR014756 -
Lsi04g02366 535 PANTHER NADH-CYTOCHROME B5 REDUCTASE 14 535 IPR001834 GO:0016491
Lsi04g02366 535 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 196 203 IPR018506 GO:0020037
Lsi04g02366 535 Pfam Oxidoreductase NAD-binding domain 410 517 IPR001433 GO:0016491
Lsi04g02366 535 Gene3D - 161 241 IPR036400 -
Lsi04g02366 535 PRINTS Cytochrome B5 signature 190 200 IPR001199 -
Lsi04g02366 535 PRINTS Cytochrome B5 signature 200 214 IPR001199 -
Lsi04g02366 535 PRINTS Cytochrome B5 signature 215 222 IPR001199 -
Lsi04g02366 535 PRINTS Cytochrome B5 signature 227 239 IPR001199 -
Lsi04g02366 535 PRINTS Eukaryotic molybdopterin domain signature 26 38 IPR008335 GO:0016491
Lsi04g02366 535 PRINTS Eukaryotic molybdopterin domain signature 12 26 IPR008335 GO:0016491
Lsi04g02366 535 PRINTS Eukaryotic molybdopterin domain signature 91 104 IPR008335 GO:0016491
Lsi04g02366 535 PRINTS Eukaryotic molybdopterin domain signature 53 63 IPR008335 GO:0016491
Lsi04g02366 535 PRINTS Eukaryotic molybdopterin domain signature 78 90 IPR008335 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 447 458 IPR001709 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 331 338 IPR001709 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 199 209 IPR001709 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 503 511 IPR001709 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 409 428 IPR001709 GO:0016491
Lsi04g02366 535 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 435 444 IPR001709 GO:0016491
Lsi04g02366 535 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 279 391 IPR017927 GO:0016491
Lsi04g02366 535 Pfam Oxidoreductase FAD-binding domain 284 390 IPR008333 -
Lsi04g02366 535 Gene3D - 386 535 IPR039261 -
Lsi04g02366 535 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 165 240 IPR001199 -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 376 390 - -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 503 511 - -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 310 321 - -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 331 338 - -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 447 458 - -
Lsi04g02366 535 PRINTS Cytochrome B5 reductase signature 409 428 - -
Lsi04g02366 535 Gene3D Translation factors 272 385 - -
Lsi04g02366 535 SMART Cyt_b5_2 168 240 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02366 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02366 Lsi-Chr4:30810134 Lsi09g00987 Lsi-Chr9:13311405 0 dispersed
Lsi04g02366 Lsi-Chr4:30810134 Lsi04g02367 Lsi-Chr4:30814473 1.05E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02366 Lsi_Chr04 FPKM 3.344115 3.47097 7.430624 8.416219 2.396994 2.79905 3.304912 7.81058 9.392612 7.610797