Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02369 ATGGCTCAAGTCGGATCTCTCTCGGCCGACACTGAGACTCTGAGCCACATATTTAGCTTGATAGAAGCGTTTAGGGCATTCGACGCAGACAACGACGGGTTGATCTCTTCAGCGGAGGTCGGGGGGATCATGGGCTCTCTCGGGTACAACCTAAGCGAGCAAGATGTGAACATGATGATGGAGGAAGGCGACGTGGACAAAGACGGGTTGTTAAGCATGGGAGAGTTTTTGGAAATGAATGCAAAGAATATGGAGGTTGGGGAGATGTTGGGGAGCTACTTGAAGATTGCTTTTGAGGCTCTAAAGGCTGATGGAGATGATCTTGTGAGTGGGGAAGAGCTTTATGATGTGTATGTGAATTTAGGTTTGGAAGAAGTTTCACTTGAGGATTGCATGGCTATTGTTGCTTCTATGGATGGGGATGGTGATGGAGCTGTGTTTCTTCATGACTTTAAACTTATTGTTAATTCTCTTCCCTAA 480 46.25 MAQVGSLSADTETLSHIFSLIEAFRAFDADNDGLISSAEVGGIMGSLGYNLSEQDVNMMMEEGDVDKDGLLSMGEFLEMNAKNMEVGEMLGSYLKIAFEALKADGDDLVSGEELYDVYVNLGLEEVSLEDCMAIVASMDGDGDGAVFLHDFKLIVNSLP 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30828042 30828521 + Lsi04G023690.1 Lsi04g02369 662418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02369 159 Pfam EF-hand domain pair 20 79 IPR002048 GO:0005509
Lsi04g02369 159 Gene3D - 2 90 - -
Lsi04g02369 159 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Lsi04g02369 159 PANTHER CALMODULIN-RELATED 20 79 - -
Lsi04g02369 159 PANTHER CALMODULIN-RELATED 22 152 - -
Lsi04g02369 159 Gene3D - 91 158 - -
Lsi04g02369 159 SUPERFAMILY EF-hand 16 155 IPR011992 -
Lsi04g02369 159 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Lsi04g02369 159 ProSiteProfiles EF-hand calcium-binding domain profile. 126 159 IPR002048 GO:0005509
Lsi04g02369 159 Pfam EF-hand domain pair 106 151 IPR002048 GO:0005509
Lsi04g02369 159 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Lsi04g02369 159 PANTHER CALCIUM BINDING PROTEIN 20 79 - -
Lsi04g02369 159 PANTHER CALCIUM BINDING PROTEIN 22 152 - -
Lsi04g02369 159 CDD EFh 20 79 IPR002048 GO:0005509
Lsi04g02369 159 SMART efh_1 93 121 IPR002048 GO:0005509
Lsi04g02369 159 SMART efh_1 19 47 IPR002048 GO:0005509
Lsi04g02369 159 SMART efh_1 130 158 IPR002048 GO:0005509
Lsi04g02369 159 SMART efh_1 55 83 IPR002048 GO:0005509
Lsi04g02369 159 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02369 - - K02183 csv:101216238 268.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02369 Lsi-Chr4:30828042 Lsi09g00688 Lsi-Chr9:7812111 3.05E-26 dispersed
Lsi04g02369 Lsi-Chr4:30828042 Lsi03g00487 Lsi-Chr3:5564930 1.60E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g324 . . . Bda03g00519 . Bpe04g00474 . . . . Cma01g01406 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02369 Csa04g01828 . . . . . . . . . . Sed12g1443 Cmo01g01456 . . . . . . Cpe02g00536 Bhi09g02642 Tan01g3986 Cmetu07g0316 . Hepe01g2259 . . Cla11g01517 Cam11g1577 Cec11g1606 Cco11g1605 Clacu11g1732 Cmu11g1550 Cre11g1969 . . Chy07g00678 Cme07g00883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013187 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02369 Lsi_Chr04 FPKM 29.420954 26.381351 46.578499 57.136074 39.016861 39.971489 46.270798 48.943493 58.055599 66.183632