Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02378 ATGCGGATCCAATGCACCTGGACCCTTCACCGCTTTCAATTCAGGCCTTCCGTTTTGTTCACATGTATTAATATTCACCCAACACGAACATCTTTTCGCTCATCTGTTCTGGCCACCATGTCCACCGTTTCCACTCAAAACACCGTCGCTTCCGACCACAATGGATCGACCAACGACACTCAGAAGCTATTGCAGGTTTCAAACCGGCTCGAAAAGTTCAAAACAACCATTTTCACTAGAATGAGTAACTTAGCAATTCAGTATGGGGGAATAAACCTTGGTCAAGGCTTTCCAAACTTTGACGGTCCTGAATTTGTAAAGGAAGCTGCAATTCAAGCCATCAAGGATGGGAAAAATCAGTACGCTCGTGGATATGGAGTGCCAGATTTGAACTTGGCCATTGCTGAAAGATTCAAGAAAGATGCTGGACTTGTCGTCGACCCTGAGAAGGAAGTTACAGTTACCTCCGGGTGCACCGAAGCAATTGCTGCAACCATGCTTGGGTTAATAAATCCTGGCGACGAGGTGATCCTTTTTGCTCCTTTTTATGATTCTTATGAAGCCACTCTATCAATGGCTGGTGCCAAAGTCAAGTGCATCACATTACGCCCTCCAGATTTTGCTCTCCCTATAAATGAGCTCAGGTCTGCAATCTCAAAGGATACTCGGGCAGTTCTTATTAACACGCCACACAACCCAACCGGAAAAATGTTCACAAGGGATGAATTGAATGAGATTGCCTCTCTCTGCATCGAGAACGATGTGTTAGTTTTTGCTGATGAAGTTTATGACAAGTTGTCTTTTGAAATGGACCACATTTCCATAGCCTCTCTTCCAGGAATGTACGAGCGCACGGTTACCATGAATTCGTTAGGAAAAACATTCTCCCTCACTGGTTGGAAGATAGGGTGGGCGATCGCCCCACCTCATTTGACATGGGGGGTGCGACAAGCACACGCTTTCCTTACGTTTGCTACTTCTACTCCGATGCAGTCGGCTGCTGCTACAGCTCTCCGAGCACCCGAATCTTACTATGAGGAGCTGAAGAAAGATTACCTGGCAAAGAAAGCCATTTTAGAAGAGGGACTGAAGGCAGTTGGTTTCAAGGTCTTTCCATCAAGCGGAACCTACTTTATTATTGTCGATCACACCCCTTTCGGGTTGAAGAACGACGTCGACTTTTGCGAGTATCTGATCAAAGAAGTTGGAGTCGTTGCTATTCCAACCAGTGTTTTCTACCTTAACCCAGAAGATGGGAAAAATCTAGTTAGATTTACATTCTGCAAAGATGAGAACACCCTCAGGGCTGCAGTCGAGAGGATGAAGGAGAAGCTAATTAGGAAGTCATGA 1350 45.56 MRIQCTWTLHRFQFRPSVLFTCINIHPTRTSFRSSVLATMSTVSTQNTVASDHNGSTNDTQKLLQVSNRLEKFKTTIFTRMSNLAIQYGGINLGQGFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNLAIAERFKKDAGLVVDPEKEVTVTSGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKCITLRPPDFALPINELRSAISKDTRAVLINTPHNPTGKMFTRDELNEIASLCIENDVLVFADEVYDKLSFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSTPMQSAAATALRAPESYYEELKKDYLAKKAILEEGLKAVGFKVFPSSGTYFIIVDHTPFGLKNDVDFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDENTLRAAVERMKEKLIRKS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30909850 30913596 + Lsi04G023780.1 Lsi04g02378 662427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02378 449 Gene3D Aspartate Aminotransferase, domain 1 80 441 IPR015422 GO:0003824
Lsi04g02378 449 Gene3D - 103 341 IPR015421 GO:0003824
Lsi04g02378 449 SUPERFAMILY PLP-dependent transferases 65 443 IPR015424 -
Lsi04g02378 449 PANTHER FI04487P 67 445 - -
Lsi04g02378 449 Pfam Aminotransferase class I and II 90 440 IPR004839 GO:0009058|GO:0030170
Lsi04g02378 449 PANTHER FI04487P 67 445 - -
Lsi04g02378 449 CDD AAT_like 91 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02378 K23977 GTK; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] - csv:101217124 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01937 Lsi-Chr2:25294492 Lsi04g02378 Lsi-Chr4:30909850 2.43E-15 dispersed
Lsi02g02451 Lsi-Chr2:31047910 Lsi04g02378 Lsi-Chr4:30909850 7.48E-96 dispersed
Lsi04g02378 Lsi-Chr4:30909850 Lsi07g00181 Lsi-Chr7:1956957 1.49E-51 dispersed
Lsi04g02378 Lsi-Chr4:30909850 Lsi08g01554 Lsi-Chr8:23599220 5.97E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g293 . . . Bda03g00529 . . . Bma01g02642 . . . Cma09g00806 . . . Cpe06g00641 . . . . . . . . . . . . . . . Cone4ag1388 Cone7ag1547 . . Lsi04g02378 Csa04g01815 . . . . . . . . . . . . Cmo09g00799 . . . Car09g00722 . . Bhi09g02655 . . . . . . Cla11g01524 Cam11g1584 Cec11g1613 Cco11g1614 Clacu11g1741 Cmu11g1559 Cre11g1975 . . Chy07g00661 Cme07g00869
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007070 1 2 2 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02378 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0