Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02379 ATGGATGGCCAGAAAAGTCAGTTGAAGCTTACAAGAACTCAGTCGTCGTTACTCCGTTCGTCACCGACTTTCCGATCGTCCATTCATAGTTTATCGTCCATCACAGAGGGGGAACTCACCGCCGTCCATCAGGAGGATGATGACGAAGAGAAGCAGAGGCCTAAGAAGCCTCGTAGGTCCGGTTCGTCGCCGAGAACCGGATTGAACCGATTTGCGAACCGTGTTCTTGCTATGGCTTTGCTTCTTTGCTTTACCTTCTTCTCGTTGCTCTTTGCGTTCTTCTTTCTCAGGAAGGATGGGCTACTTCCGTCGGAAAACTTCTTGTTGGCTTTGATTTTTGTTGCTATTACGCTTGTATTCGTGAGCAAGAATAAGGGGTTAATTTTACATATTCTTTCGTTTATCAAGCATTCCTGGCACGAGAATGCAAAGAGATTCTGTTTCTCCAGGACGGATTCGACTCCGGTCCAGTGGTACATTGGGGATTCGAACGGAGCCGAAGACGAGGCCCAAAAGCAGAGAAAAATTATCAGAGAGGGCGTAGAGTTCTATAGCAATGGCGATTTCTACGAGGGAGAGTTTCACAACGGGAGTTGTAATGGAAGTGGGGTTTATAACTATTTCCTAAGTGGTAGATACGAAGGAGATTGGGTCGATGGGCGGTACGATGGCTATGGGGTTGAGAGCTGGGCGAAGGGGAGTCGTTACAGGGGCCAATATCGACAAGGTCTTAGACATGGATTTGGAGTATATAAGTTCTTCACGGGTGATTCCTATGCCGGTGAGTGGTGCAATGGCCAAAGCCATGGCGTTGGGTTTCAGACTTGCGCTGATGGTAGCTGCTATGTTGGCGAGTTCAAGCGCGGCGTTAAGCATGGTCTTGGATGTTACTATTTCAGAAATGGAGATAGATACGCTGGAGAATACTTTGGGGACAAAGTACACGGTTTCGGAATATACCATTTCGCGAACGGCCATTGTTACGAAGGATCATGGCATGAAGGCCAAAGGCAAGGATACGGTACATATACTTTCCGAAACAGCGAAGTGAAATGCGGCGAATGGGATGCTGGTAGCCTCAAGCATCCTCTCTCGCCGTTGAACGACACCGTACTCCAAGCTGTTCAGGCATCTAGAAAGGCAGCAAGGAATGCTATAAACCTTCCCCGGTTGGATGAAGAGGTGAATAAAGCTGTGGTTGCTGCTAATAGAGCGGCCACTTCAGCCAGAGTTGCGGCCATCAAAGCCGTTCAAAATCGAATGGATGGTAAATTTTGCGATCCTGATGTGTAA 1293 48.03 MDGQKSQLKLTRTQSSLLRSSPTFRSSIHSLSSITEGELTAVHQEDDDEEKQRPKKPRRSGSSPRTGLNRFANRVLAMALLLCFTFFSLLFAFFFLRKDGLLPSENFLLALIFVAITLVFVSKNKGLILHILSFIKHSWHENAKRFCFSRTDSTPVQWYIGDSNGAEDEAQKQRKIIREGVEFYSNGDFYEGEFHNGSCNGSGVYNYFLSGRYEGDWVDGRYDGYGVESWAKGSRYRGQYRQGLRHGFGVYKFFTGDSYAGEWCNGQSHGVGFQTCADGSCYVGEFKRGVKHGLGCYYFRNGDRYAGEYFGDKVHGFGIYHFANGHCYEGSWHEGQRQGYGTYTFRNSEVKCGEWDAGSLKHPLSPLNDTVLQAVQASRKAARNAINLPRLDEEVNKAVVAANRAATSARVAAIKAVQNRMDGKFCDPDV 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30916089 30918718 + Lsi04G023790.1 Lsi04g02379 662428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02379 430 Gene3D - 220 264 - -
Lsi04g02379 430 Gene3D - 311 378 - -
Lsi04g02379 430 Gene3D - 265 310 - -
Lsi04g02379 430 Gene3D - 172 219 - -
Lsi04g02379 430 PANTHER RADIAL SPOKE HEAD 10 HOMOLOG B-LIKE 16 423 - -
Lsi04g02379 430 MobiDBLite consensus disorder prediction 40 57 - -
Lsi04g02379 430 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 184 289 - -
Lsi04g02379 430 SMART morn 280 301 IPR003409 -
Lsi04g02379 430 SMART morn 234 255 IPR003409 -
Lsi04g02379 430 SMART morn 188 210 IPR003409 -
Lsi04g02379 430 SMART morn 326 347 IPR003409 -
Lsi04g02379 430 SMART morn 211 232 IPR003409 -
Lsi04g02379 430 SMART morn 303 324 IPR003409 -
Lsi04g02379 430 SMART morn 257 278 IPR003409 -
Lsi04g02379 430 MobiDBLite consensus disorder prediction 1 65 - -
Lsi04g02379 430 Pfam MORN repeat 190 205 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 259 280 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 282 304 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 305 326 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 236 257 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 213 235 IPR003409 -
Lsi04g02379 430 Pfam MORN repeat 328 347 IPR003409 -
Lsi04g02379 430 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 256 358 - -
Lsi04g02379 430 MobiDBLite consensus disorder prediction 1 39 - -
Lsi04g02379 430 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 16 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02379 - - - csv:101216886 806.594
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02379 Lsi08g00414 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02372 Lsi-Chr4:30848515 Lsi04g02379 Lsi-Chr4:30916089 1.97E-06 proximal
Lsi01g01780 Lsi-Chr1:17042072 Lsi04g02379 Lsi-Chr4:30916089 4.75E-17 transposed
Lsi03g00861 Lsi-Chr3:14188108 Lsi04g02379 Lsi-Chr4:30916089 6.18E-07 transposed
Lsi04g00025 Lsi-Chr4:369457 Lsi04g02379 Lsi-Chr4:30916089 4.95E-12 transposed
Lsi07g01244 Lsi-Chr7:18177447 Lsi04g02379 Lsi-Chr4:30916089 1.83E-120 transposed
Lsi09g00798 Lsi-Chr9:9147002 Lsi04g02379 Lsi-Chr4:30916089 4.43E-11 transposed
Lsi09g01052 Lsi-Chr9:15917342 Lsi04g02379 Lsi-Chr4:30916089 6.51E-10 transposed
Lsi09g01108 Lsi-Chr9:17730977 Lsi04g02379 Lsi-Chr4:30916089 4.46E-121 transposed
Lsi03g01984 Lsi-Chr3:31225926 Lsi04g02379 Lsi-Chr4:30916089 8.84E-12 transposed
Lsi04g02379 Lsi-Chr4:30916089 Lsi08g00414 Lsi-Chr8:11584026 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02379 Lsi_Chr04 FPKM 1.955503 0.0 0.936484 1.696245 2.475919 2.184165 2.360728 2.403479 2.80648 2.291864