Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02380 ATGTCCTTCAGCCCACCCCAACACACAACCACCAACCGCCCTACCACAACCTTCCACCTCTACTGGTGCCACCAATGCCACCGAACCATCACCCTCGCCTCTGCACACCCGTCAGAGCTCACCTGCCCACGTTGTTTCGGGCAGTTCATTGAAGAGGTCCGCCTCACCCTACCAGAATTTGATCCCTCGCCAGAAGCTCGTTTACTTGAAGCCCTATCACTAATGCTCAACCAGCCGATTCGTCTCTTCAATAACAGAAACCCAGGCTTGAACCGTCGTCGTCCACCACACACGTTCGACGATTTCGACCGGAGATCGTTTAGTGATCCTGAAGGAGATGAATTGCCTCGCTGGCAAACACGGTGGCGCAATCAAAGCCTAGACGAGATGGACAATTCTAGCCAACAACCCCCAAATCCAAATCGGTCTCGGACTGTCATCGTTTTCGGCCCCCCCGACCAACTTCAGCCCATTCAACCAATATTACCACGAAGAGTCAATCCAAGAGACTACTTCACTGGACCACAACTCGATCAATTAATTGAAGAGCTTACGCAAAACGACCGACCAGGGCTGCCACCAGCAAGCGAGGAGACAATCGAGAGGATTCCAATGGTGAAAATAACGGCAGAGCATTTGAAGAACGACTCGCACTGCCCAATTTGTAAGGAGGAGTTTGATGTGGGGGGAGAAGCAAGGGAATTGAGTTGTAAGCATATATACCATTCAGAGTGCATAGTGCCATGGCTTCGGCTTCATAACTCTTGCCCGGTTTGTAGGCAAGAGATGCCGCCATTGACACCGGAGAATGAAGCGTCGGGAAGTTCTGAAGATGAAGGGGGGTTCGGAAGAAGATGTGCCAGGTGGTGGAGTCAGTTGGTGTCTTGGCCATTTCGGAATAGGTATAGGCAGATTATTCCTTCAATTCCACGGAATCGCTTCAATGCTTCTTCTCGAGGTGATGCCTAA 969 51.08 MSFSPPQHTTTNRPTTTFHLYWCHQCHRTITLASAHPSELTCPRCFGQFIEEVRLTLPEFDPSPEARLLEALSLMLNQPIRLFNNRNPGLNRRRPPHTFDDFDRRSFSDPEGDELPRWQTRWRNQSLDEMDNSSQQPPNPNRSRTVIVFGPPDQLQPIQPILPRRVNPRDYFTGPQLDQLIEELTQNDRPGLPPASEETIERIPMVKITAEHLKNDSHCPICKEEFDVGGEARELSCKHIYHSECIVPWLRLHNSCPVCRQEMPPLTPENEASGSSEDEGGFGRRCARWWSQLVSWPFRNRYRQIIPSIPRNRFNASSRGDA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30927669 30928637 + Lsi04G023800.1 Lsi04g02380 662429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02380 322 PANTHER - 14 71 - -
Lsi04g02380 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 71 - -
Lsi04g02380 322 PANTHER - 137 296 - -
Lsi04g02380 322 CDD RING-H2_RNF126_like 219 260 - -
Lsi04g02380 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 266 IPR013083 -
Lsi04g02380 322 Pfam Ring finger domain 218 260 IPR001841 -
Lsi04g02380 322 MobiDBLite consensus disorder prediction 84 118 - -
Lsi04g02380 322 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Lsi04g02380 322 SUPERFAMILY RING/U-box 199 267 - -
Lsi04g02380 322 Pfam zinc-ribbon 21 52 IPR039525 GO:0061630
Lsi04g02380 322 SMART ring_2 219 259 IPR001841 -
Lsi04g02380 322 MobiDBLite consensus disorder prediction 93 118 - -
Lsi04g02380 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02380 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101215288 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02380 Lsi-Chr4:30927669 Lsi02g00268 Lsi-Chr2:2266246 3.99E-33 dispersed
Lsi04g02380 Lsi-Chr4:30927669 Lsi04g00895 Lsi-Chr4:8938365 6.89E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02380 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0