Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02383 ATGATATCTGCAACTGCCGCGATAATATGGCGACCTTCTTCTTCACCATTATCACTACTCCTCAAAGCTCAAACACCTCGTCGGACTTTGACTCCTTCGGCTTCATTCTCCTCATCTCTTCCCTCTCGCAAACTCATTCTGTACTCCAAACCCGGATGCTGTTTGTGCGACGGCCTCAAAGAGAAACTACACGCCGCCTTTCTGCTTGCCGGCCCCGATTCTCTCCACGACGTGAGGGATATCACTACGAACCCAGAATGGGAGAGAGCTTACCAGTACGAGATTCCCGTGCTTGCGAAAGTGCGCTCTGATGGCTCGGAGGTTGGTTTCATTCATTCTAGTGATTCTGATTAG 354 50.28 MISATAAIIWRPSSSPLSLLLKAQTPRRTLTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLAGPDSLHDVRDITTNPEWERAYQYEIPVLAKVRSDGSEVGFIHSSDSD 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30972070 30972526 + Lsi04G023830.1 Lsi04g02383 662432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02383 117 Gene3D Glutaredoxin 37 117 - -
Lsi04g02383 117 PANTHER GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG 28 112 - -
Lsi04g02383 117 SUPERFAMILY Thioredoxin-like 39 110 IPR036249 -
Lsi04g02383 117 Pfam Glutaredoxin-like domain (DUF836) 44 105 IPR008554 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02383 - - - csv:101215760 177.563
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g287 . . . Bda03g00532 . Bpe04g00486 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1394 . . . Lsi04g02383 Csa04g01809 . . . . . . . . . . Sed12g1462 . . . . . . . . Bhi09g02664 Tan01g4020 Cmetu07g1621 . . . . Cla11g01529 Cam11g1589 Cec11g1618 Cco11g1619 Clacu11g1747 Cmu11g1564 Cre11g1980 . . Chy07g00655 Cme07g00860
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006506 1 2 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02383 Lsi_Chr04 FPKM 6.061735 6.301651 2.035275 1.727104 41.98035 40.863522 41.200012 0.751955 0.94171 1.747168