Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g02384 | ATGGGAGCTGAATCAGGGCTTGCAAACTTTTGTGGAATGATTCATAAAATAAAGCCCTACTTAGCTATGATTTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACAATGCTTTGTCTTAAGAAGGGTATGAACCATTACGTTCTCGCCGTTTATCGACACGTTGTTGCCACCATTGTCATCTCTCCCTTCGCTATCATCCTCGAAAGGCCTGTGTTGGATCAAAATCTATATTATGTGGGTTTGAAACTTACCTCAGCAACATTCACTTCTGTCACCATCAATATTCTCCCAGCAGTAACCTTCATTATGGCTCTCATTTTCAGGCTGGAAAGTGTGAATTTCAAGAAGATTCGTAGCATCGCTAAGGTGGCAGGAACATTGGTCACGATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATCTTCCACGGACATGGACGCCACGCCGCCCACCACAGCGGCAGCAATGAGTCCGCCGACCAGCACTGGGTCCTCGGAACCCTCATGCTTCTCGGCAGTATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCATTCACACTGAGGAAATATCCGGCGGAGCTGTCGTTGACCGCCCTGATTTGCGTGGCCGGCACGGTGGAGGGCTCCATTGTGACCCTTATTATGGAGCGTGACTTTAGCGTGTGGGTCATTGGCTGGGACTCTCGTCTTCTTGCTGCTGTTTATACTGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGCGTGGTGATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCGTAATAGGAGCCATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCATATAAACAAATTGACAAATCAAAAAAGCGGCGCCACTACCGAATTACCCATCACCGCCGAGCCGGAAACTGCCACCGCCACCGCCGCCGAGCGTTGTTCTTCCAAAGCTCCACCGGCCTGA | 1071 | 49.02 | MGAESGLANFCGMIHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFAIILERPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNFKKIRSIAKVAGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSGSNESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAFLGSIVLAEQIHLGSVIGAIFIVMGLYLVVWGKAKDHINKLTNQKSGATTELPITAEPETATATAAERCSSKAPPA | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30985937 | 30989220 | + | Lsi04G023840.1 | Lsi04g02384 | 662433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g02384 | 356 | Pfam | EamA-like transporter family | 172 | 310 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi04g02384 | 356 | PANTHER | WAT1-RELATED PROTEIN | 13 | 71 | - | - | |
| Lsi04g02384 | 356 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 53 | 142 | - | - | |
| Lsi04g02384 | 356 | PANTHER | WAT1-RELATED PROTEIN | 13 | 71 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi04g02384 | 356 | PANTHER | WAT1-RELATED PROTEIN | 71 | 335 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi04g02384 | 356 | PANTHER | WAT1-RELATED PROTEIN | 71 | 335 | - | - | |
| Lsi04g02384 | 356 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 234 | 314 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01762 | Lsi-Chr1:16447996 | Lsi04g02384 | Lsi-Chr4:30985937 | 1.40E-84 | dispersed | |
| Lsi03g01415 | Lsi-Chr3:25098181 | Lsi04g02384 | Lsi-Chr4:30985937 | 2.09E-28 | dispersed | |
| Lsi03g01630 | Lsi-Chr3:27421729 | Lsi04g02384 | Lsi-Chr4:30985937 | 3.35E-105 | dispersed | |
| Lsi04g00742 | Lsi-Chr4:6891686 | Lsi04g02384 | Lsi-Chr4:30985937 | 5.30E-64 | dispersed | |
| Lsi04g00873 | Lsi-Chr4:8539635 | Lsi04g02384 | Lsi-Chr4:30985937 | 3.15E-96 | dispersed | |
| Lsi04g00874 | Lsi-Chr4:8564497 | Lsi04g02384 | Lsi-Chr4:30985937 | 7.01E-92 | dispersed | |
| Lsi04g01711 | Lsi-Chr4:24449640 | Lsi04g02384 | Lsi-Chr4:30985937 | 8.59E-58 | dispersed | |
| Lsi08g00421 | Lsi-Chr8:11732116 | Lsi04g02384 | Lsi-Chr4:30985937 | 2.41E-31 | dispersed | |
| Lsi08g00422 | Lsi-Chr8:11736209 | Lsi04g02384 | Lsi-Chr4:30985937 | 8.39E-49 | dispersed | |
| Lsi09g01062 | Lsi-Chr9:16263837 | Lsi04g02384 | Lsi-Chr4:30985937 | 2.62E-37 | dispersed | |
| Lsi11g00654 | Lsi-Chr11:6877896 | Lsi04g02384 | Lsi-Chr4:30985937 | 7.21E-67 | transposed | |
| Lsi11g00715 | Lsi-Chr11:7653360 | Lsi04g02384 | Lsi-Chr4:30985937 | 5.55E-59 | transposed | |
| Lsi04g02384 | Lsi-Chr4:30985937 | Lsi08g00420 | Lsi-Chr8:11705883 | 2.24E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g02384 | - | - | csv:101216002 | 618.231 |