Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02385 ATGGAGCCGGCTGAGCAATCGGGGAATGTGACGGAAGTTGGCGCCACTGAGATCGGCAAACGGGAGCTCAGACGTGTTCGCCGTAAACTGGTACAGTCTACGCTACTTCCTCACAAGCCTCAAGAACAGGAGGAGAATGGAGTCGATCAAGAGGAGGAGAACAATTGCGGCGAGGAGGAGGAATTATGGGGGAGTCGGGGCAAGAAGAAAAGGAAGTCGAAGGTGAAGACGACGCCTCAATCGAGAAGCTCAAAGAAGGTGAAGGAAAAGCGAGCAGTAAACTTGACGCCGAAGAAAATTTTGCATTTTGAAGAGGCAACTCCAACAATTCCCGACTTGCGTCTGGAGGCCAAAATGACCAGAGAGGATGATGAACTATCTCCAGACTGGAAAAACTGGACTTTCACGGACAGAAATATTATACATAATGGCCAGACATTACAAAAAGCTTGTTCATCAGTATTTGAAGGCTCTGTTAAGTCTTTAAGTTTAGACGACCTTCCAATTGTGTTGCCACCCTCCGATTCTACTCCTGGTACAAACGAGGAGCCCATGGATCATGATTCCATCAAGCAAGAATGCATTAAAGAGTTAACGTCAACTGTATACAGCGTGGATGCTGAAAAGGAATTAATGCTCCATCACCTCCTAAGTAGTGCTGAAATGGATGATAACCTGAATAAAACACGTGGGCTTAGTGATTCTGAAGGAAGGCCAATTCTTGAGCATCAAAGTATATTCCTTCAGGACAGAATGCAGTCCTACTACCTTCGTTGTCAAAGCCGTCCCAAAAATTGTTTATGGACATACAAGTATCAGCCGAAGATGGCTATGGAGGTATGTGGTAATCTTGAATCAGTCAAGTTCTTGAGTGAGTGGCTACACCTCTGGTATGAACGAAATTCACAGAACAACAAAGATTTTGGTGGAGGGAATAAATTCCAGAAGCAAGATAACAATGGTTACTGTTCTCAGAGTGATTCTGACTATGAAAGTCCAGATGAAGAGGATAGCCTGACGAATGTTCTCCTCGTCACGGGATCATCTGGGAGTGGGAAGTCTGCAGCCGTTTATGCTTGTGCTGAAGAGCATGGTTTCAGGGTTTTTGAGTTCAGTGCATCTGTCATTCGATCAGGAGCTGTTCTCAAGCAGATGATTGGAGAAGCTTTACAATCTCATCAGCTAAAATGGTCAGTAAAACATTCCCAGGGATCAAAGAACAATTTTATTGAGAAATGTTCCTCTCTTCAAGAGAGTACAGCAGCTAAATGTTTATCGAATGAGGTGATTGAACTCATCCCTTTATCAGACGATGACTCTAAAGATTACATTAACGGTGTTGGAGAATTTGAATACATCGCATCTGAAAGCCTCAGCAGCCAAGGTGAAGCTAAGCCTTTAATTCTTTTAGAGGACGTGGATATCATTTTTCTTGAGGATCGAGGTTTTATATCTGCAATTCTAGAGATTGCTGACACAGGAAAGGGACCCATAATTTTGACCAGCAATAGTAGCGATCCTGTTCTCCCTGATAATTTGAGTAGGCTACAGGTCTCTTTTATACGACCATCATCAAAGGAACTACTCAGCCATTTATATAAGATTTGTGCTTCTGAAGGAGTCAGCATCCAACCATGCTTACTTGAGCGCATTATTCATTGTTGCCACAAAGATATACGAAAAACCATTATGCATCTTCAATTCTGGTGCCAGGGTACAAGATTTAGAGATAAAATTCAGAAAAAGTATGGCTCACTTTTATTTGATATTGATGCTGGCCATCAGATACTGCCGATGATAATGCCGTGGAGTTTCCCATCTCAGTTATCAGAGCTAGTTGACAAAGAGATAACAAAGTCATTATTAGAAATGGAAACAACATGCTTGCTGGAGGCAAGTGAAGGTGAATTTAATGAAGAGGAAATGCTGAATGGTCTGGACTACCAAAATTATGAAGACAACTATTTTTTAGAGGCCAAGAAGGCAGCAATGTTGAGTAGGAATGGATCGATTCAAGATCACAATGAATTTGCAGTTGAGTTTGATGCTGCACATGAGTGTTCTGATATTTCAGGAACCCCTATTCCTTTACCTGGGAAGAAGCACCGAAGAAGGCTGGATATGGTAGTGTCTTCTGACTCTGAAGGTGGTCCTATCAACAAGGAATGTTCTCTAGTACCTAATAAAGACGACGGTATATTATCATCTCACCGTCAAATATCTCCGAATTACTCAAGCCCATTAAATGGGCTGCTTTATCAAATGGTAGATAATACTGTTGAAGATCATTATCCAACTTCAGAAACTGCAGGAGGTATACATGTGAATGAGATGTCCATGTCTGTCACTACCTCATACGTACCAGAATCAATTTTTGTTCCTGAGACTGAAATTCATGATACGGAGTTGTTTCCCAAAATGGTATCTCATGGTGACGCTGGTGCCAGTCCAGAAGTTTCTATGGATGAGCTTTTTCAGAATGTGTTAGCAATTGAAGCCAATAGTTTTGGTTCACCTACACATACTATACAACAAACTACAGCTGTTTTGGAAGACACTTGCAACGTATTTAATTTATCTCGCCAGGAGGGGGAAGGATTTTCTTGTAATGGACATATAGAAAACATTATCAGAGGGTATCCTGTGATGGATGAGTGCAGCCGTGTAGACTTTAACAAGTCCAAGTTTGTAGAGAAACCCGAATTGAATGTGCCGGGTGATTCATTGCATAAATTGTGGAAACAACTTCGCCTCGGTCGCTTAGATCTTCTAGGACATTTTGTCCCGCCAGAAAAGAAAGAAACCTGTCAGATCGTCGAACTAGTTCATAGAATGAGCCATCTAATTTCAGATTTGGACCTGCTTTCTTCCTGCCGACCACAAGATATGTTGGAGACGCCAACATTTATATCCGAGGAATCAGACTCATTCTCCTGGGGAGGTGAGCAATTGCAGATGGCATCTGCAATTGCTCAGCATGGATTTAGCCTCATTGCTAATGATATTGCTACCACGGGTTCTCAAGTCGGCTTTGGTAGCAGTGTGGATATTGTATCAGAAATGCTTGCCTCTGCAACTAATACGGCAGCATTGGGTAAATTATTGAGGCATAATGTGATGGAAAATTCCTCTTCCACTAATAAGATTTTGAAACTGAGCCTTCCAGGAAACAGTCATATGCAAGAGAGATCGTATTTGGCACTAAAAGGTGTTCAATTCTTCGAATATCTTTCTTCATTGCGCTTCATTTCAAGATCAGAGACTTTACGTATATCAAAAGGCACTAATAAGACGAAAAGACGAAGGGGACGGGTTGCACGACATTACTTGAGTACTGGTTCTCATCTGTTCTCCCCTGAAGATATAACATTGCTGGGACAATCTAACCTTCCTTATAAAGATAATCAAGGATGTTAA 3417 41.79 MEPAEQSGNVTEVGATEIGKRELRRVRRKLVQSTLLPHKPQEQEENGVDQEEENNCGEEEELWGSRGKKKRKSKVKTTPQSRSSKKVKEKRAVNLTPKKILHFEEATPTIPDLRLEAKMTREDDELSPDWKNWTFTDRNIIHNGQTLQKACSSVFEGSVKSLSLDDLPIVLPPSDSTPGTNEEPMDHDSIKQECIKELTSTVYSVDAEKELMLHHLLSSAEMDDNLNKTRGLSDSEGRPILEHQSIFLQDRMQSYYLRCQSRPKNCLWTYKYQPKMAMEVCGNLESVKFLSEWLHLWYERNSQNNKDFGGGNKFQKQDNNGYCSQSDSDYESPDEEDSLTNVLLVTGSSGSGKSAAVYACAEEHGFRVFEFSASVIRSGAVLKQMIGEALQSHQLKWSVKHSQGSKNNFIEKCSSLQESTAAKCLSNEVIELIPLSDDDSKDYINGVGEFEYIASESLSSQGEAKPLILLEDVDIIFLEDRGFISAILEIADTGKGPIILTSNSSDPVLPDNLSRLQVSFIRPSSKELLSHLYKICASEGVSIQPCLLERIIHCCHKDIRKTIMHLQFWCQGTRFRDKIQKKYGSLLFDIDAGHQILPMIMPWSFPSQLSELVDKEITKSLLEMETTCLLEASEGEFNEEEMLNGLDYQNYEDNYFLEAKKAAMLSRNGSIQDHNEFAVEFDAAHECSDISGTPIPLPGKKHRRRLDMVVSSDSEGGPINKECSLVPNKDDGILSSHRQISPNYSSPLNGLLYQMVDNTVEDHYPTSETAGGIHVNEMSMSVTTSYVPESIFVPETEIHDTELFPKMVSHGDAGASPEVSMDELFQNVLAIEANSFGSPTHTIQQTTAVLEDTCNVFNLSRQEGEGFSCNGHIENIIRGYPVMDECSRVDFNKSKFVEKPELNVPGDSLHKLWKQLRLGRLDLLGHFVPPEKKETCQIVELVHRMSHLISDLDLLSSCRPQDMLETPTFISEESDSFSWGGEQLQMASAIAQHGFSLIANDIATTGSQVGFGSSVDIVSEMLASATNTAALGKLLRHNVMENSSSTNKILKLSLPGNSHMQERSYLALKGVQFFEYLSSLRFISRSETLRISKGTNKTKRRRGRVARHYLSTGSHLFSPEDITLLGQSNLPYKDNQGC 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30997873 31009607 + Lsi04G023850.1 Lsi04g02385 662434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02385 1138 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 15 88 IPR004582 GO:0006281
Lsi04g02385 1138 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 121 1136 IPR004582 GO:0006281
Lsi04g02385 1138 MobiDBLite consensus disorder prediction 1 90 - -
Lsi04g02385 1138 Gene3D - 523 585 - -
Lsi04g02385 1138 Gene3D - 265 520 IPR027417 -
Lsi04g02385 1138 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 121 1136 - -
Lsi04g02385 1138 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 15 88 - -
Lsi04g02385 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 575 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02385 - - - bhj:120086264 1878.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02385 Lsi-Chr4:30997873 Lsi10g01127 Lsi-Chr10:15509515 1.58E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1401 Cone7ag1538 . . Lsi04g02385 . . . . . . . . . . . . . . . . . . . . Bhi09g02668 . . . . . . . . . . . . . . . Chy07g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02385 Lsi_Chr04 FPKM 116.806122 125.850792 78.315788 74.925606 29.791901 22.206738 31.660461 13.924692 12.654834 15.772416