Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02391 ATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCCGCGGCAGCTCTTGTTTTCTCATAGTTTTATTTTGATTCTGCGGAAAAGTAACTCTGATGGCATGGGTGCTGCTTATGGAACTGCTAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTCGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGACTTGCTTGTGGACTGGCTGGTCTATCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAGCCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCGGGCCAATCTCGTGCAGAATAA 513 46.98 MKLLLSSASSGPRQLLFSHSFILILRKSNSDGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31039642 31042363 - Lsi04G023910.1 Lsi04g02391 662440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02391 170 CDD ATP-synt_Vo_c_ATP6C_rpt2 94 161 - -
Lsi04g02391 170 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 33 126 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 Pfam ATP synthase subunit C 102 160 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02391 170 Pfam ATP synthase subunit C 32 81 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 112 138 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 139 162 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 61 85 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 35 59 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 30 170 - -
Lsi04g02391 170 SUPERFAMILY F1F0 ATP synthase subunit C 92 161 IPR035921 -
Lsi04g02391 170 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 30 170 - -
Lsi04g02391 170 CDD ATP-synt_Vo_c_ATP6C_rpt1 33 85 - -
Lsi04g02391 170 Gene3D - 15 167 IPR035921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02391 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - mus:103985214 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02151 Lsi-Chr4:28604995 Lsi04g02391 Lsi-Chr4:31039642 7.11E-17 dispersed
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01343 Lsi-Chr8:21729053 8.84E-85 dispersed
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01161 Lsi-Chr8:20269244 2.22E-20 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi02g02834 . 1 626 Primary Pumps ATPases(2) AT1G78900 90.2 0.0e+00 1139.4
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT3G08560 58.7 2.6e-69 258.8
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28710 85.6 9.3e-103 370.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02391 Lsi_Chr04 FPKM 6.539042 7.106421 5.303442 5.48788 8.994426 9.476345 9.199493 5.188293 4.606099 4.298615