Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g02391 | ATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCCGCGGCAGCTCTTGTTTTCTCATAGTTTTATTTTGATTCTGCGGAAAAGTAACTCTGATGGCATGGGTGCTGCTTATGGAACTGCTAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTCGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGACTTGCTTGTGGACTGGCTGGTCTATCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAGCCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCGGGCCAATCTCGTGCAGAATAA | 513 | 46.98 | MKLLLSSASSGPRQLLFSHSFILILRKSNSDGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31039642 | 31042363 | - | Lsi04G023910.1 | Lsi04g02391 | 662440 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g02391 | 170 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 94 | 161 | - | - | |
Lsi04g02391 | 170 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 33 | 126 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi04g02391 | 170 | Pfam | ATP synthase subunit C | 102 | 160 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Lsi04g02391 | 170 | Pfam | ATP synthase subunit C | 32 | 81 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Lsi04g02391 | 170 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 112 | 138 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi04g02391 | 170 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 139 | 162 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi04g02391 | 170 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 61 | 85 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi04g02391 | 170 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 35 | 59 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi04g02391 | 170 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C2 | 30 | 170 | - | - | |
Lsi04g02391 | 170 | SUPERFAMILY | F1F0 ATP synthase subunit C | 92 | 161 | IPR035921 | - | |
Lsi04g02391 | 170 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 30 | 170 | - | - | |
Lsi04g02391 | 170 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 33 | 85 | - | - | |
Lsi04g02391 | 170 | Gene3D | - | 15 | 167 | IPR035921 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02151 | Lsi-Chr4:28604995 | Lsi04g02391 | Lsi-Chr4:31039642 | 7.11E-17 | dispersed | |
Lsi04g02391 | Lsi-Chr4:31039642 | Lsi08g01343 | Lsi-Chr8:21729053 | 8.84E-85 | dispersed | |
Lsi04g02391 | Lsi-Chr4:31039642 | Lsi08g01161 | Lsi-Chr8:20269244 | 2.22E-20 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g02391 | K02155 | - | mus:103985214 | 240.736 |