Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02391 ATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCCGCGGCAGCTCTTGTTTTCTCATAGTTTTATTTTGATTCTGCGGAAAAGTAACTCTGATGGCATGGGTGCTGCTTATGGAACTGCTAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTCGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACATCTGTCTTCTGGACTTGCTTGTGGACTGGCTGGTCTATCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAGCCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCGGGCCAATCTCGTGCAGAATAA 513 46.98 MKLLLSSASSGPRQLLFSHSFILILRKSNSDGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31039642 31042363 - Lsi04G023910.1 Lsi04g02391 662440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02391 170 CDD ATP-synt_Vo_c_ATP6C_rpt2 94 161 - -
Lsi04g02391 170 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 33 126 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 Pfam ATP synthase subunit C 102 160 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02391 170 Pfam ATP synthase subunit C 32 81 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 112 138 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 139 162 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 61 85 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PRINTS Vacuolar ATP synthase 16kDa subunit signature 35 59 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi04g02391 170 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 30 170 - -
Lsi04g02391 170 SUPERFAMILY F1F0 ATP synthase subunit C 92 161 IPR035921 -
Lsi04g02391 170 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 30 170 - -
Lsi04g02391 170 CDD ATP-synt_Vo_c_ATP6C_rpt1 33 85 - -
Lsi04g02391 170 Gene3D - 15 167 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02151 Lsi-Chr4:28604995 Lsi04g02391 Lsi-Chr4:31039642 7.11E-17 dispersed
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01343 Lsi-Chr8:21729053 8.84E-85 dispersed
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01161 Lsi-Chr8:20269244 2.22E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02391 K02155 - mus:103985214 240.736