Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02394 ATGGCTTCAGATTATGCGTTGAAGGTCCCTGCTGAACTCGAATCAGCTTTGCGGTTGAAGACTGTTCAGTACTTCATTACAAAAAGGCCGTGGCTTGATCTCTACGGAGTTAATGTTAGACCTGTTGCGCCATTTGGAAGTTCGAGTCGGCAGCCATTTGTTGATCCAGCATTAATACATCGCTGCTTGCCAGATGAGTTACTGTTTGAGGTCTTTGCCAGAATGACTCCTTATGACCTGGGACGGGCATCGTGTGTCTGTCGAAAATGGAGATATACTATTCGGAATCCTGTATTCTGGCGTAGTGCTTGTTTGAAGGCTTGGCAGCTTTCTGGTGTTGTTGAAAACTACAAGTTTTTGCAGTCTATGTATGATGGATCATGGAGAAAAATGTGGCTCTTACGACCAAGGATTCGCACTGATGGTCTTTATGTTAGCAGGAATACTTATATACGCGCTGGGATTGCAGAGTGGAAGATTACCAATCCAGTTCACCTGGTCTGCTATTTCCGTTACATCAGATTTTTTCCTTCTGGGCGGTTTCTCTACAAGAATTCTTCACAGAAGATTAAGGATGTGGCTAAGTGCATGAATTTTCGTGCTTCGAAAGCCGACTGTATTTTTGGTGGACACTATACCTTGTCAGATGATAAGGTTGAAGCAGCTGTTTTGTACCCAGGTGCGCGTCCTACTGTGCTCAGAATCCGCATGAGGCTAAGAGGAACATCAACGGGGGCTAATAACCGAATGGATCTATTGACCCTTGTTACCAGTGGTATGAACAACAATGAGGTTGGTGATCCTGAAGAAGATATCCTTGGCATAGTGGAAAGGTGGCGAGACGATGAAACACACAACCCAGATGTGCCTGCAGTTTCTCATAAGCGGGGCCTGACACCTTTTATATTTGTTCCTTTTGATCAGCAAGTTGTAGATGCTTTTGCATGTTTGGAACAGTCGCACGTCTCAGATGCTAGATTGAAGTCAGAACCAGCTAAGAAATTCGAGGGTTGTACAAAGCCTCTAAGGAATTCTATAATTAATGGCCTTCTACGGAATAGAGATAAAGATGTGAGACTTCTATTAGCTATATGTGTTAGTGAAATTTTCCGGGTCATGGCACCAGAACCACCTTTCGAAGACAAATATCTAAGGGATGTTTTTATGCTTCTTTTGAGTTCTTTTTCGGAGCTAGCAGACACGACAAGTCCACTTTTCTCTTGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGTTGTGTGATAATGCTTGACATTGGATGCAACGACTTGGTGTTGGACATGTTTAATACATTTTTCTCTGCTTTGAGAGACTATCACGAGCCTAGTTTGGTTAACAACTTTTTGTCCATAATGACCCATATTCTAAGCGAGGATGCCTCTCCACCACTTGTAGATGTTGTTTTGCATAATCTCGTAAAGGAGGAAAAGGGTGAACCCACAGCTGCTTCTCGCCTTGCGGGTTCCATAATTGGAACTTGTGCCGAGACGCTTGAACCGTTAATTTGTGGATTCTTAACATCTTCACAGAAGTACCGAGGACTTTTTATGGAGTTCTTGAAAAGGTTTTGTGACAAGTCTGCAGAAGTTAGAATTCATGCAATCCAATGTGCTAAAGAATGTTATATGGCCAATCCTGATTGTTCAGAATCTATGGAAGTTCTTGCTGCAGTAGAAGAACGATTACTAGACTTGGATGATAGAGTAAGAACACAAGCTGTAATTGTTGTTTGTGATATTGCCCGATCAAATATCAAATTTGTTCCACCGACACTAATATCTCAAGCTGCTGAAAGACTACGAGATAAGAGGATATCAGTTAGGAAAAAAGCCCTTCAGAAATTGTTGGAAGCATATCGAGATTATTGTGATAAATGTTCTAAAGGCCAATCGACTATGAATGATGCCTTTGAACAGATCCCATATTTATTCCCAGCTGATCTCTCCATTGAGGAAAGAACTAGACACTGGATTCGTTTATTCTCTCTTTTCAATAACCATCATGAAAAGGCCCTCGGATATGTTTTGCTGCAAAAACAGAGGTTACAAAATGAGCTGCGGACTTATTTGGGTCTACGAAAAGGGGACAAGGAGAACCGATCAGAAGAAATGGAAAAGCGAATTGAAACTGCATTTGTCAAAATGGCAGCTTGCTTTCCAGATCCTACAAAAGCAAAAGAGTCCTTTTATAAATTAAATCAAATTAAAGATAATAATATTTTTAATTCTTTGGAGCTTTTACTTGACCAGTTGACAATTGTTGAAGCTGAGGCCACCAGAGTTATTATCAGCATTTTCCCCTCACTCATCAGAGCCTTGGAAGGTCGACTGCTGAGGTTGTTGGAAGAAAGCAATTCAATTGATAGTAAGCTGATCGACGTATTGTCAAAGGCAGGCCCTCCTTTATCAATTGAACTCAGTTACTCTCCCTTCACTTGTGCCAAATGCTTGACCTTGTTAATCATACATTCATACTTAAGGTCGACCAACAATGATCTTTATGTTTACGTGGACTTATCAGATAATTTAAGTACATTAGATGGTGATGCTGCTGGCAGCGATTCTTGGGATTTAAAGATTTATGGGTTGAAAACCCTCGTTAAGAGTTTTTTGCCACATCAAGGGACGCCTAGAAGAAATGTTGACAAGTTTCTGAACATTTTATCTCGGATGCTGAACATGTGTGAAGCTTCTGTTGAGATCATTCCTACTGAGGATGATCAGGCTCGAATCAAGTTAGCTGCCGCAAAATCAGTTCTCCGTCTTGCTAGAAGATGGGATTTACAAATTGCACCAGAGATTTTCCGTTTGACAATCTTGATGGCAAAGGACCCGTCTTCTAAGTTTAGAAAGCAATTTATTGACAAAGCACACAAGTTACTAAAGGAGCAGGCTATACCTACTCGATATGCTTGTGCTTTTGCATTTTGCTTCTCGGATTGCATGAAAGATCTTCAGGATGATTCACTTAAATATATGGCAGAATTTATTGAGCAATACAGTAAGATTGCACAGATTCATCAAACTTCTGTGGTTCAAGATGGGTCAATGACTTTTGTCCCAGCGTATGTAGTAGTATTCTTGATATATATTCTAGCTCATGATTCAGGCTTCCCACATGTGGACTGTCAAGATGAAAATGTATATGCTCAATTTTGCAGGCCATTCCTATTTGTGTTACAGATGTTAGTTAATGCAGATGTAAATGTTGCCAAAGATACTGTTTTGTATTTGCACAGTATTTTTCGTGCCATTAGGAGGGTTGAGGATGCTGTGGATATCGAAACATCACCTGACAATGTGTTGAAAAAGAGCAGTTTGGAGGATGCGCCCTCAATGTATGTCAACGACCAGCTTACTAATCCTTGCAGTATGAAGTCTCCATCGCCGGATTTTGCTTTTAGAGCTCCATTTTTAGGTTTACAGGCGGTGCCTCCCTCTTATCATGTGCGCTTCTCCATGGCGAACTTGAGGACCGACTCTCCAGTCGCTTGTCGCATCGTCCGTGCCTTTCTTGACTTCATTAACTCCGTGGAACCTGGTCCAGGTGTCGATGTTGAAGGCCTCGAGGTCGCAAAACAATGTTTAGAACAAGTGTTTAAAGTTGAGTCTCCTGCTGCCGACGAGTTAACGGATTTCGATTCGCTAGTAGAAATTTTTAGTTCACCGGAATCTTTTCAGCGTTCTCGAACTAGTTCATTTGTTGATAATGGAGCTGTTCCATTGGCTCATCACAGTCCTCTCAATGTGAATGATTCTGATGCCAATTTGTCAGAGTCGAAACCTCAGGGGGGTGATTGGTCGAGAGAATCTCATCCCGTAGGGAGGACATTTAGAAAGGATGGTGGAAAAATTGCACTTCGATGCACAAGTTTTTCACTTGTTTGGTCACCATCCATAAGATTAACTGCAATGGCCACTGGACCAGGAGTATTGCAAGATGAACTTTTTGGGCAATTTGTTCTTGCGCTTGAAAAACTTCACTATTTTAGGACCACAGCAGATGGGAGGGATGATCCTGACCAACTCGAGCGAGCAACACGTTTATTTCATGATGCTCTTGGAGAGATGAAAAGATCCGGATGCCCTGAAATTAATCACAAAAATCTGGCCGAGTCCTTGAAATCCCTTGGTAACAGGGCTATGCAGTCGAAACTATACTCTGACGCAATTGAGTTGTATAGCTGTGCAATTGCACTATGTGAAAATAATGCCATTTACTACTGTAACAGTTGCGATACTGCACCTGCACGGTTTAACAACAACGGATTTAATTGTATGCAGGGTTCAACAAGTCGAAGTCAAGAATCCCAAAACCAGTCTGGTGGTGGAAGGTCAAGGAGTGACAGCCCCCCATCTCCTCCCTTCCCTTCTATGCCATTTAACGTCACTCTACCTTCCGGAATCTCGAACATGTTTATGAACATGGCTGCTAACACTACAAACTCGTTCCAGGGGCAACATTCCGAAGACAATGGAGAAGAGAATAGAAGCAGAAATGGTTCGGCAGATCCCGGAACGAATATGGATGGAACTTTCAGTTTCAGCATTGGAGATGGGATGCCACAGGATCTGAATGGTGCTTTGAGATCTATGATGCAAATGTTCACAGGAGCAGCCCCTGGTGGGAACCCTCAGGATAATTTCAATGGAAGACCCCCACAAAGCTGA 4698 42.1 MASDYALKVPAELESALRLKTVQYFITKRPWLDLYGVNVRPVAPFGSSSRQPFVDPALIHRCLPDELLFEVFARMTPYDLGRASCVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKFLQSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYPGARPTVLRIRMRLRGTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQQVVDAFACLEQSHVSDARLKSEPAKKFEGCTKPLRNSIINGLLRNRDKDVRLLLAICVSEIFRVMAPEPPFEDKYLRDVFMLLLSSFSELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLDMFNTFFSALRDYHEPSLVNNFLSIMTHILSEDASPPLVDVVLHNLVKEEKGEPTAASRLAGSIIGTCAETLEPLICGFLTSSQKYRGLFMEFLKRFCDKSAEVRIHAIQCAKECYMANPDCSESMEVLAAVEERLLDLDDRVRTQAVIVVCDIARSNIKFVPPTLISQAAERLRDKRISVRKKALQKLLEAYRDYCDKCSKGQSTMNDAFEQIPYLFPADLSIEERTRHWIRLFSLFNNHHEKALGYVLLQKQRLQNELRTYLGLRKGDKENRSEEMEKRIETAFVKMAACFPDPTKAKESFYKLNQIKDNNIFNSLELLLDQLTIVEAEATRVIISIFPSLIRALEGRLLRLLEESNSIDSKLIDVLSKAGPPLSIELSYSPFTCAKCLTLLIIHSYLRSTNNDLYVYVDLSDNLSTLDGDAAGSDSWDLKIYGLKTLVKSFLPHQGTPRRNVDKFLNILSRMLNMCEASVEIIPTEDDQARIKLAAAKSVLRLARRWDLQIAPEIFRLTILMAKDPSSKFRKQFIDKAHKLLKEQAIPTRYACAFAFCFSDCMKDLQDDSLKYMAEFIEQYSKIAQIHQTSVVQDGSMTFVPAYVVVFLIYILAHDSGFPHVDCQDENVYAQFCRPFLFVLQMLVNADVNVAKDTVLYLHSIFRAIRRVEDAVDIETSPDNVLKKSSLEDAPSMYVNDQLTNPCSMKSPSPDFAFRAPFLGLQAVPPSYHVRFSMANLRTDSPVACRIVRAFLDFINSVEPGPGVDVEGLEVAKQCLEQVFKVESPAADELTDFDSLVEIFSSPESFQRSRTSSFVDNGAVPLAHHSPLNVNDSDANLSESKPQGGDWSRESHPVGRTFRKDGGKIALRCTSFSLVWSPSIRLTAMATGPGVLQDELFGQFVLALEKLHYFRTTADGRDDPDQLERATRLFHDALGEMKRSGCPEINHKNLAESLKSLGNRAMQSKLYSDAIELYSCAIALCENNAIYYCNSCDTAPARFNNNGFNCMQGSTSRSQESQNQSGGGRSRSDSPPSPPFPSMPFNVTLPSGISNMFMNMAANTTNSFQGQHSEDNGEENRSRNGSADPGTNMDGTFSFSIGDGMPQDLNGALRSMMQMFTGAAPGGNPQDNFNGRPPQS 1565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31063877 31105210 - Lsi04G023940.1 Lsi04g02394 662443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02394 1565 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 324 518 IPR039776 GO:0007064
Lsi04g02394 1565 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 518 1108 IPR039776 GO:0007064
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1550 1565 - -
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1259 1273 - -
Lsi04g02394 1565 Pfam Sister chromatid cohesion protein PDS5 protein 338 517 - -
Lsi04g02394 1565 Pfam Sister chromatid cohesion protein PDS5 protein 651 761 - -
Lsi04g02394 1565 Pfam Sister chromatid cohesion protein PDS5 protein 519 650 - -
Lsi04g02394 1565 Pfam Sister chromatid cohesion protein PDS5 protein 861 1107 - -
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1492 1531 - -
Lsi04g02394 1565 SUPERFAMILY ARM repeat 350 1011 IPR016024 -
Lsi04g02394 1565 SUPERFAMILY TPR-like 1377 1420 IPR011990 GO:0005515
Lsi04g02394 1565 Gene3D Immunoglobulin FC, subunit C 1162 1234 - -
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1259 1284 - -
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1508 1523 - -
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1438 1457 - -
Lsi04g02394 1565 Gene3D Tetratricopeptide repeat domain 1366 1424 IPR011990 GO:0005515
Lsi04g02394 1565 Gene3D - 53 141 - -
Lsi04g02394 1565 SUPERFAMILY F-box domain 61 139 IPR036047 GO:0005515
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1545 1565 - -
Lsi04g02394 1565 Pfam F-box only protein C-terminal region 118 309 IPR045464 -
Lsi04g02394 1565 Gene3D - 342 670 IPR011989 -
Lsi04g02394 1565 ProSiteProfiles F-box domain profile. 57 103 IPR001810 GO:0005515
Lsi04g02394 1565 MobiDBLite consensus disorder prediction 1438 1471 - -
Lsi04g02394 1565 Pfam F-box-like 61 106 IPR001810 GO:0005515
Lsi04g02394 1565 SMART fbox_2 63 103 IPR001810 GO:0005515
Lsi04g02394 1565 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 324 518 - -
Lsi04g02394 1565 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 518 1108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02394 K10295 FBXO9; F-box protein 9 K11267 cpap:110816785 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01163 Lsi-Chr2:14039926 Lsi04g02394 Lsi-Chr4:31063877 8.46E-11 dispersed
Lsi03g00094 Lsi-Chr3:1362720 Lsi04g02394 Lsi-Chr4:31063877 2.56E-25 dispersed
Lsi04g02394 Lsi-Chr4:31063877 Lsi08g01243 Lsi-Chr8:20888388 1.72E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g255 . . . . . . . . . . . Cma09g00791 . . . Cpe06g00624 . . . . . . . . . . . . . . . Cone4ag1413 Cone7ag1525 . . Lsi04g02394 Csa04g01794 . . . . . Bda01g01441 Bpe02g01645 . . . . . Cmo09g00783 . . . Car09g00704 . . Bhi09g02687 . . . . . . Cla11g01539 Cam11g1600 Cec11g1629 Cco11g1630 Clacu11g1757 Cmu11g1573 Cre11g1991 . . Chy07g00633 Cme07g00847
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02394 Lsi_Chr04 FPKM 0.951591 0.0 1.125442 1.316082 5.079985 6.993786 4.657735 4.731607 6.145277 6.554525