Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02397 ATGATTTTGTTGTTGATAATTATGTCATTCTCTCCTTTCAGATGTGGACAATGTAAGAAGTTGGCACCGGAGTATGAAAAAGCTGCTAATATCCTGAGTAAGCATAATCCTCCTTTGGCTCTAGCAAAAGTTAACATTGCAAATGAAGCAAACGAGGGACTTGCTGGATCCGATGGCACCATTTCTATTAAGATTGTGAGAGAGGGAGGTAAGGATGTTCAAGAATACAAGGGTCCTTATGATGCAGCTGGTATTGTTAAATATGTGAAGAGACAGTATGGGCCTGCCTCTGTTGAAACAAATACTCTGGAGGATGCCCAAATGTTCATAGCTGACAATAAGATTGCTATTGTTGGCATATTCCCTCAATTTTCTGGGGAGGAGTTTGAAAACTATACTATCCTAGCCAAGAAATTGCGTCCTACTGAGGAATTTGTTCACACTTCAGATGCCAAACTTCTTCCTCGTGGCGAATCATCTGTCACTGGTCCCTTAATGAGGGTATTCAAGCCATTTGATGAGCTTTTTGTTGATACTCAGGATTTTGACATGAATGCTCTCGAGAAGTTTGTTGAAAAATCAATTGTACCTACGGTAACTATCATGGATGGTGACCAGAGAAATCAACGTCTAGTTGACAATTTCATGCATAATTCAAATTCGAAGGTCATGTTGTTTATAAATTTTAGCAGTGAGATGGCTGATTCCTTTAAATACAAGTATCGTGATCTTGCTGAGCTGTACAAAGGAGACAGTCTCAGTTTTCTGATGGCAGATATTGATGTTAGTTCTCATGCGATTAAGCAATATGGAATTAAGGATGATGAAATACCCTTTATTATCCTACTAAGTGATAGAACAAAGTATCTGAAATCCAATGTGGAGCCTGATGAACTTTCTCCTTGGTTGAAAAAATATAAGAACGGAGATTTGGAACCATACATAAAATCTGAACCTATACCAGAGCATAATGACGAGCCTGTGAAAGTGGTGGTAGCTCACACATTTCAGGACACAGTTTTCAACTCAAGGAAGAATGTTCTGCTTGAGTTTTATGCTCCTGCACATAAAGACTGCAAAGAGCTGGCTTCAGTCTTTGAGGATCTTGCCATCTCATATCAAAGAGATCCTGATGTCATAATTGCTAAATTCGATATTTTTGCAAATGACTTACTACATGACTTTGAGATCTGGACACTCCCTACTGTTTACTTCAAATCGGCCGATGGGAACATATTGCAGTACACTGGGTACGCGACGAAGGAAGACTTCAGAGATTTCATTGAAAAGAATAGGTTTAAAACTGCTGATGAAGATTTGGATATGAAGGATGAGCTCTAA 1341 38.93 MILLLIIMSFSPFRCGQCKKLAPEYEKAANILSKHNPPLALAKVNIANEANEGLAGSDGTISIKIVREGGKDVQEYKGPYDAAGIVKYVKRQYGPASVETNTLEDAQMFIADNKIAIVGIFPQFSGEEFENYTILAKKLRPTEEFVHTSDAKLLPRGESSVTGPLMRVFKPFDELFVDTQDFDMNALEKFVEKSIVPTVTIMDGDQRNQRLVDNFMHNSNSKVMLFINFSSEMADSFKYKYRDLAELYKGDSLSFLMADIDVSSHAIKQYGIKDDEIPFIILLSDRTKYLKSNVEPDELSPWLKKYKNGDLEPYIKSEPIPEHNDEPVKVVVAHTFQDTVFNSRKNVLLEFYAPAHKDCKELASVFEDLAISYQRDPDVIIAKFDIFANDLLHDFEIWTLPTVYFKSADGNILQYTGYATKEDFRDFIEKNRFKTADEDLDMKDEL 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31118044 31125264 - Lsi04G023970.1 Lsi04g02397 662446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02397 446 CDD PDI_a_family 6 89 - -
Lsi04g02397 446 Pfam Thioredoxin-like domain 121 304 - -
Lsi04g02397 446 SUPERFAMILY Thioredoxin-like 293 431 IPR036249 -
Lsi04g02397 446 Gene3D Glutaredoxin 4 83 - -
Lsi04g02397 446 Pfam Thioredoxin 6 90 IPR013766 -
Lsi04g02397 446 Pfam Thioredoxin 328 430 IPR013766 -
Lsi04g02397 446 PANTHER PROTEIN DISULFIDE-ISOMERASE 6 441 - -
Lsi04g02397 446 SUPERFAMILY Thioredoxin-like 9 95 IPR036249 -
Lsi04g02397 446 Gene3D Glutaredoxin 197 321 - -
Lsi04g02397 446 PANTHER PROTEIN DISULFIDE ISOMERASE 6 441 - -
Lsi04g02397 446 CDD PDI_b_family 97 193 - -
Lsi04g02397 446 SUPERFAMILY Thioredoxin-like 212 325 IPR036249 -
Lsi04g02397 446 SUPERFAMILY Thioredoxin-like 98 204 IPR036249 -
Lsi04g02397 446 CDD PDI_b'_family 208 307 - -
Lsi04g02397 446 ProSiteProfiles Thioredoxin domain profile. 306 433 IPR013766 -
Lsi04g02397 446 Gene3D Glutaredoxin 322 432 - -
Lsi04g02397 446 Gene3D Glutaredoxin 84 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02397 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - csv:101217662 780.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02397 Lsi08g00442 CCT
Lsi04g02397 Lsi08g00442 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02397 Lsi-Chr4:31118044 Lsi07g00506 Lsi-Chr7:5314166 8.60E-20 dispersed
Lsi04g02397 Lsi-Chr4:31118044 Lsi08g00442 Lsi-Chr8:12044547 5.18E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014530 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 3 2 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02397 Lsi_Chr04 FPKM 0.0 0.478634 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0