Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02398 ATGGGCTGTGGAGGATCCAAGGTGGACGAGCTTCAATTGGTGACTCTTTGTAGAGAGCGGAAGGAGTTAATCAAAGCCGCGTCTCGACATCGTTATGCTCTTGCTGCAGCTCATGTCACGTATTTTCAGTCTCTCAAAGACATTGGCGAAGCCATACGCAAATTTGTTGATGAAGAGATTGTGATATCTGGTGCTGAATCATCATCCTCCCATGGCTCTCCTGTTCTTACACTGCCTTCCGATGAAGGGAAAGGGAAGAGGAAGAAACCGAAATCGGGTGAGAAACACATCAACTCGTCTTCTTCTTCCTCGGTTTTACATGATCCCTCTCCCCATGAGGACGAGATTGAGGGTTCTCACTTGCATTTATCATCTGGATCGGAGTCTGAATCTGAACACAATTCTTCGGGTCATATTCATATCGAGGATAGCCCAGTACATGATGAAGTTTATAGCCATCCTCCTTATGCTTATCCGCAAAGGGATATCCCAGTACAAGATGAAGGTTATAGCCATCCTCCCTATGCTTATCCGCCCAGAGATTTCCCAGTACAAGATGAAGGATATAGCCATCCTCATGGTTATCCGCCGAGGGATATCCCAGTACAAGTTGAAGGTTATAGCCATCCTCCTTATGCTTATCCGCCTAGGGAAATCCCAGTACAAGTTGAAGGTCATAGCCATCCTCCTCCATATGCTTATCCCCCAAGGGATTGGAGTTCAACGAATACGTACGCCTATTATATGCAAAAGTCAACCACTCCCACGACAACGGTAATGTATAATGAGCCGGAAACACATACAGCTTCAGATGGGCAGTGGCCTGGTCCATCGTACAGTTATCCACCCTATCCGCAGTATGGAAACGACGGGTTCTATGGGTTTTCAATGGGTTCACCACCGGGTTATAACATGGCCAATCAGCAGCCGAAGCGCCCTGCTACTCCACCTCCTCCGCCTTCTCCGCCGAAGGTCTCTGCTTGGGATTTTATGAATGTTTTTGATGGCTATGATAATGGTTACCAGGATTATAGTTCGGCAAATAGATATGGGTATGGTTCCATTCAGAGCAGTCCTGATTCCAATGAAGTGAGGGAGAGAGAAGGGATACCTGAGTTGGAAGATGAAACTGAGCCTGAAGCTCTGAAAGAAATTAAAGAGAGGAAGAAATTGAAGGTGGAGGCGATGAACAAGAATCTGAATTCAGGGGAGGGAACTTCAAAGTTTGTACCACAGCAGAGTAGTGAGGACAGCTCAAAATCGGTGCCACTGCCAAATACTGGTAGCTCATCGGTATCAAAGGAAAAGGGCATAAATAACAGCCCTGATACAATTGTGTCGAAAAAATCGGAACAGGAGGAGCCAGTGGAGAAGAAAGAGGTGAGTTTCGAGATTGAGGAGACTTCGACACTGGATATTGAATCTTCCAAGAAAAGTAATTTAGCCACATTCGCTGCCTTTGGTACAAGGGACCTCCAGGAAGTTGTGAGTGAAATTAAGGATGAATTTGAAGCTGCTTCTAGCTATGGGAAAGAGGTTGCCATGTTGCTTGAAGTGGGAAGATTGCCTTATCGGTCTAAGATCACTGTACTTAAAGGTTGTGGTCCTAGATTGCGGCGTTACAGAAATTCCTGTTATTGTGCAGTTATTCTTTCTCGGATCCAGTACTTGGTGTCCCCTTCCACAGCATCTGCTCAGCCGCCATTGATTTGGTTGGACCCTAAGACTGTGAAAATGGCGAAAGCATACTCTGGGTCTAGCAGTCCTGGCAATGAGTTTGACTTGAAATCTGGAAGCCTTTCATCTACGCTGGAGAAGCTTTATGCATGGGAGAAGAAACTGTATAAAGAAGTTAAGGATGAAGAAAGATTACGTGTTATTTATGAAAAACTGTGCAAAAAGTTGAAAAGGTTAGATGAACATGGAGCTGATTCCACTAAAATTGATGCTACTCATGCCTCTATTAGAAAATTATCAACCAAGATCGACGTCTGTATCAAAGCCGCTGATGCTATATCAAGTAGGATACATAAATTGCGGGATGAAGAATTGCAGCCCCAATTAACTGAACTTATTCATGGGTGGATAAAAATGTGGAGTTCCATTCTCAAATGTCACCAGAAACAATTTCAAGCAGTCATGGAGAGCAAGATTCGCTCGTTAAAAGCTAGAACCGGTTCTAGAAGAGATGAGAGTTTGAAAGCTACTGTCGATCTTGAAATGGAACTTGTCAATTGGTGCACCAGATTTAACAATTGGATTCACACACAAAAGGCTTATGTCGAATCTTTAAATGGATGGCTCCTACGATGCCTTAACAATGAGCCTGAAGAAACCGCTGACGGAGTTGCTCCGTTCTCACCAGGTCGGATGGGCGCTCCACCAATTTTCATTATCTGCAATGATTGGCACCAAGCTATGCTTGAAATTTCAGAAGATAAAGTGGTTGGTGCCATTCATGGGTTTGCTTTAAACTTGCATGAGTTATGGGAAAGGCAAGATGAGGAACAACGTCAGAGAATCAAAGCCAATTTCCTTTACAAGGATTTTGAAGAACACCTTAGAACCTTGAAAATGGAGAGGGGAATGATAAAATCTGACCAAGATGAGGCATCAGGAAGAACTGCACTTTCAAAAGTTCCTTCTGAAAATGGAGTTTCGCCACCAGATGATCTGAAAGCTAATTTAGATTCATTGAGGAAGAAGTTATATGATGAGAGAGCAAAACACAAGGATGCCATTAAACTGGTTCACAATGCTGCTTCAAATAGCATACAAGCAGGATTGTACTACAACAGGTTGCATGTGATTGGGAGATGCTCTACGACATACTGA 2835 43.81 MGCGGSKVDELQLVTLCRERKELIKAASRHRYALAAAHVTYFQSLKDIGEAIRKFVDEEIVISGAESSSSHGSPVLTLPSDEGKGKRKKPKSGEKHINSSSSSSVLHDPSPHEDEIEGSHLHLSSGSESESEHNSSGHIHIEDSPVHDEVYSHPPYAYPQRDIPVQDEGYSHPPYAYPPRDFPVQDEGYSHPHGYPPRDIPVQVEGYSHPPYAYPPREIPVQVEGHSHPPPYAYPPRDWSSTNTYAYYMQKSTTPTTTVMYNEPETHTASDGQWPGPSYSYPPYPQYGNDGFYGFSMGSPPGYNMANQQPKRPATPPPPPSPPKVSAWDFMNVFDGYDNGYQDYSSANRYGYGSIQSSPDSNEVREREGIPELEDETEPEALKEIKERKKLKVEAMNKNLNSGEGTSKFVPQQSSEDSSKSVPLPNTGSSSVSKEKGINNSPDTIVSKKSEQEEPVEKKEVSFEIEETSTLDIESSKKSNLATFAAFGTRDLQEVVSEIKDEFEAASSYGKEVAMLLEVGRLPYRSKITVLKGCGPRLRRYRNSCYCAVILSRIQYLVSPSTASAQPPLIWLDPKTVKMAKAYSGSSSPGNEFDLKSGSLSSTLEKLYAWEKKLYKEVKDEERLRVIYEKLCKKLKRLDEHGADSTKIDATHASIRKLSTKIDVCIKAADAISSRIHKLRDEELQPQLTELIHGWIKMWSSILKCHQKQFQAVMESKIRSLKARTGSRRDESLKATVDLEMELVNWCTRFNNWIHTQKAYVESLNGWLLRCLNNEPEETADGVAPFSPGRMGAPPIFIICNDWHQAMLEISEDKVVGAIHGFALNLHELWERQDEEQRQRIKANFLYKDFEEHLRTLKMERGMIKSDQDEASGRTALSKVPSENGVSPPDDLKANLDSLRKKLYDERAKHKDAIKLVHNAASNSIQAGLYYNRLHVIGRCSTTY 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31125749 31132904 - Lsi04G023980.1 Lsi04g02398 662447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02398 944 MobiDBLite consensus disorder prediction 300 325 - -
Lsi04g02398 944 PANTHER UNCHARACTERIZED 1 929 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 64 140 - -
Lsi04g02398 944 Pfam Protein of unknown function (DUF632) 492 827 IPR006867 -
Lsi04g02398 944 PANTHER FAMILY PROTEIN, PUTATIVE (DUF630 AND DUF632)-RELATED 1 929 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 447 463 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 311 325 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 399 446 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 863 891 - -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 379 395 - -
Lsi04g02398 944 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Lsi04g02398 944 MobiDBLite consensus disorder prediction 352 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02398 - - - csv:101217905 1597.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02398 Lsi-Chr4:31125749 Lsi11g01274 Lsi-Chr11:21307960 1.05E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02398 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0