Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02400 ATGGAGAAATGGCGAATGGGAGGACGACACCTCTTTCTTAACGATTCGCCTGCTCCATGGAAATCCACTCACATAATTCCCTCAACCAAGGATCATTCGTATCAATTCCCACATTACAAGTTTTCTCTCTCTGTGTATTCTGATTCTTGTCGGCGGCGGCGGCGGCGGCGATTCGCGATGTCGGAGTTGGAGGTGTTCGACGCAGCGGCGGCGACGGATTTGGTGAAGAAACTGAGACGTAGTTTTACTAGCGGCAGGACTCGGAGCTATGAGTGGAGAGTGTCGCAGCTTGAGAGCCTCTTGAAGCTTAGCGTTGAGCATGAGGAAGATCTCTGCGATGCGCTTCGCTCTGACCTTTCGAAGCCTGTGTTGGAATCTATCGTTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCATCTGCTGCAATCGTACCAGAACCTTTTGGTGTCGTCCTGATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAGAACTTTTAGGGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCTGAAACTAATGCTTTGTTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGACGCATAGTGATGGCAGCTGCCGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCGCCTGATTATATCATAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATTGTGCATGGAGGTGAAAAGGACCAAACAAAGCTGCAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCTTACTTCCCATTCTCACGGTCGACAAAGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAGGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACAATTAGCACGTTACCGTTCGGAGGAGTAGGGGAGAGCGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGGAGTTTCGCAGGCGATGCACCGATGAGATACCCGCCATACACTAAGGGAAAGCTGAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGTTGGTCATAA 1632 45.47 MEKWRMGGRHLFLNDSPAPWKSTHIIPSTKDHSYQFPHYKFSLSVYSDSCRRRRRRRFAMSELEVFDAAAATDLVKKLRRSFTSGRTRSYEWRVSQLESLLKLSVEHEEDLCDALRSDLSKPVLESIVHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAELLGKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITTKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDQTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKRLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGWS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31151398 31156909 + Lsi04G024000.1 Lsi04g02400 662449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02400 543 SUPERFAMILY ALDH-like 73 515 IPR016161 GO:0016491
Lsi04g02400 543 PANTHER ALDEHYDE DEHYDROGENASE 63 543 - -
Lsi04g02400 543 PANTHER ALDEHYDE DEHYDROGENASE 63 543 IPR012394 GO:0006081
Lsi04g02400 543 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 276 283 IPR029510 GO:0016491
Lsi04g02400 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 280 480 IPR016163 GO:0016620
Lsi04g02400 543 PIRSF ALDH 54 533 IPR012394 GO:0006081
Lsi04g02400 543 CDD ALDH_F3FHI 71 502 - -
Lsi04g02400 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 79 498 IPR016162 GO:0016491
Lsi04g02400 543 Pfam Aldehyde dehydrogenase family 65 500 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02400 Lsi-Chr4:31151398 Lsi07g00222 Lsi-Chr7:2384536 4.98E-163 dispersed
Lsi04g02399 Lsi-Chr4:31150381 Lsi04g02400 Lsi-Chr4:31151398 3.27E-20 tandem
Lsi04g02400 Lsi-Chr4:31151398 Lsi04g02401 Lsi-Chr4:31158328 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02400 K00128 - csv:101219329 821.617