Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02400 ATGGAGAAATGGCGAATGGGAGGACGACACCTCTTTCTTAACGATTCGCCTGCTCCATGGAAATCCACTCACATAATTCCCTCAACCAAGGATCATTCGTATCAATTCCCACATTACAAGTTTTCTCTCTCTGTGTATTCTGATTCTTGTCGGCGGCGGCGGCGGCGGCGATTCGCGATGTCGGAGTTGGAGGTGTTCGACGCAGCGGCGGCGACGGATTTGGTGAAGAAACTGAGACGTAGTTTTACTAGCGGCAGGACTCGGAGCTATGAGTGGAGAGTGTCGCAGCTTGAGAGCCTCTTGAAGCTTAGCGTTGAGCATGAGGAAGATCTCTGCGATGCGCTTCGCTCTGACCTTTCGAAGCCTGTGTTGGAATCTATCGTTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCATCTGCTGCAATCGTACCAGAACCTTTTGGTGTCGTCCTGATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAGAACTTTTAGGGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCTGAAACTAATGCTTTGTTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGACGCATAGTGATGGCAGCTGCCGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCGCCTGATTATATCATAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATTGTGCATGGAGGTGAAAAGGACCAAACAAAGCTGCAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCTTACTTCCCATTCTCACGGTCGACAAAGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAGGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACAATTAGCACGTTACCGTTCGGAGGAGTAGGGGAGAGCGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGGAGTTTCGCAGGCGATGCACCGATGAGATACCCGCCATACACTAAGGGAAAGCTGAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGTTGGTCATAA 1632 45.47 MEKWRMGGRHLFLNDSPAPWKSTHIIPSTKDHSYQFPHYKFSLSVYSDSCRRRRRRRFAMSELEVFDAAAATDLVKKLRRSFTSGRTRSYEWRVSQLESLLKLSVEHEEDLCDALRSDLSKPVLESIVHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAELLGKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITTKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDQTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKRLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGWS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31151398 31156909 + Lsi04G024000.1 Lsi04g02400 662449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02400 543 SUPERFAMILY ALDH-like 73 515 IPR016161 GO:0016491
Lsi04g02400 543 PANTHER ALDEHYDE DEHYDROGENASE 63 543 - -
Lsi04g02400 543 PANTHER ALDEHYDE DEHYDROGENASE 63 543 IPR012394 GO:0006081
Lsi04g02400 543 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 276 283 IPR029510 GO:0016491
Lsi04g02400 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 280 480 IPR016163 GO:0016620
Lsi04g02400 543 PIRSF ALDH 54 533 IPR012394 GO:0006081
Lsi04g02400 543 CDD ALDH_F3FHI 71 502 - -
Lsi04g02400 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 79 498 IPR016162 GO:0016491
Lsi04g02400 543 Pfam Aldehyde dehydrogenase family 65 500 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02400 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219329 821.617
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02400 Lsi-Chr4:31151398 Lsi07g00222 Lsi-Chr7:2384536 4.98E-163 dispersed
Lsi04g02399 Lsi-Chr4:31150381 Lsi04g02400 Lsi-Chr4:31151398 3.27E-20 tandem
Lsi04g02400 Lsi-Chr4:31151398 Lsi04g02401 Lsi-Chr4:31158328 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00887 . 4 363 Aldehyde Dehydrogenase Gene Family AT3G24503 72.6 2.4e-152 535.8
Lsi06g01544 . 73 538 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 5.1e-147 518.1
Lsi06g01544 . 1 538 Aldehyde Dehydrogenase Gene Family AT3G48000 74.2 4.5e-242 833.9
Lsi11g00444 . 3 570 Aldehyde Dehydrogenase Gene Family AT3G48000 64.8 9.2e-211 729.9
Lsi06g00887 . 19 362 Aldehyde Dehydrogenase Gene Family AT3G48000 55.2 4.6e-109 392.1
Lsi06g01544 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 70.2 7.6e-157 550.4
Lsi11g00444 . 3 424 Aldehyde Dehydrogenase Gene Family AT1G23800 61.8 1.8e-137 486.1
Lsi06g00887 . 19 347 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 3.1e-102 369.0
Lsi04g02400 . 66 543 Aldehyde Dehydrogenase Gene Family AT4G34240 64.2 9.9e-181 630.2
Lsi04g02401 . 15 445 Aldehyde Dehydrogenase Gene Family AT4G34240 55.7 3.0e-145 512.3
Lsi04g02400 . 131 541 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 2.3e-177 618.6
Lsi04g02401 . 75 443 Aldehyde Dehydrogenase Gene Family AT1G44170 63.0 4.8e-146 514.6
Lsi07g00222 . 89 503 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 5.7e-115 411.4
Lsi07g00222 . 29 504 Aldehyde Dehydrogenase Gene Family AT4G36250 62.2 4.3e-183 637.9
Lsi10g01510 . 37 526 Aldehyde Dehydrogenase Gene Family AT1G79440 70.2 2.2e-204 708.8
Lsi03g00690 . 12 485 Aldehyde Dehydrogenase Gene Family AT2G14170 80.1 8.3e-229 790.0
Lsi01g00821 . 177 688 Aldehyde Dehydrogenase Gene Family AT2G14170 61.4 2.2e-181 632.5
Lsi06g01516 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 82.0 7.6e-252 866.3
Lsi06g01516 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 82.5 1.7e-254 875.2
Lsi11g00399 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 2.2e-267 917.9
Lsi02g00309 . 21 549 Aldehyde Dehydrogenase Gene Family AT5G62530 75.7 2.4e-246 848.2
Lsi09g01486 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.3e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02400 Lsi_Chr04 FPKM 0.20017 0.127287 20.962313 24.105177 1.339319 1.171222 1.26857 0.267269 0.243513 0.359897