Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02401 ATGTCGGAAACGAAGGTGTTTGATGCGGCGGCGGCGGCGGCGGCGACGGAGTTGGTGAAGGAGCTGAGAGGTATTTTTGGCTCCGGCAACACTCGGAGCTATGAGTGGAGAGTGGCGCAGCTTGAGAGCCTCTTAAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGATAAGGTTCAAACTACAATTACCAGTTTTCCTTCGTCTGCTGCAATCGTACCAGAACCTTTGGGTGTTGTGTTGATCATCTCCACTTGGAATTATCCATTCTATTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACATCATCTTTAATAGCAAAACTTTTTGAGAAGTATTTGGATACGTCTGCCGTGAAAGTTGTTGAGGGTGCTATTCCCGAAACTAATGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTGGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTACTTCTTCCCCCTCCTCCTCATAGCATCGTTATGCGGATTATATCTGGTAAGTGGGGTGGTAACAATGGACAAGCATGCGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTACGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGCATTGTGAATGCTAACCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATAAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAACTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCCTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGAGCTTGCCATGGGAAGTTTTCCTTTGATGCATTTAGCCATAAGAAGGCGGTTCTTTATCGAAGTTTCGTAGGCGACGTGCCGATGAGATACCCGCCTTATACAAATGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAACTCATTCGTGCTCTTCTTGGTTGGTCGTAA 1338 44.32 MSETKVFDAAAAAAATELVKELRGIFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPDKVQTTITSFPSSAAIVPEPLGVVLIISTWNYPFYLSLDPVVGAIAAGNAVVLKPSEISPATSSLIAKLFEKYLDTSAVKVVEGAIPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVLLPPPPHSIVMRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNANHFNRLTKLLDDDKVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITLAVSTLPFGGVGESGMGACHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTNGKLRFLKALLGGGILELIRALLGWS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31158328 31164299 + Lsi04G024010.1 Lsi04g02401 662450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02401 445 SUPERFAMILY ALDH-like 17 419 IPR016161 GO:0016491
Lsi04g02401 445 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 220 227 IPR029510 GO:0016491
Lsi04g02401 445 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 370 431 IPR016162 GO:0016491
Lsi04g02401 445 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 366 445 - -
Lsi04g02401 445 Pfam Aldehyde dehydrogenase family 10 369 IPR015590 GO:0016491
Lsi04g02401 445 PIRSF ALDH 367 437 IPR012394 GO:0006081
Lsi04g02401 445 PIRSF ALDH 2 371 IPR012394 GO:0006081
Lsi04g02401 445 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 4 369 - -
Lsi04g02401 445 PANTHER ALDEHYDE DEHYDROGENASE 4 369 IPR012394 GO:0006081
Lsi04g02401 445 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 223 IPR016162 GO:0016491
Lsi04g02401 445 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 224 369 IPR016163 GO:0016620
Lsi04g02401 445 PANTHER ALDEHYDE DEHYDROGENASE 366 445 IPR012394 GO:0006081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02399 Lsi-Chr4:31150381 Lsi04g02401 Lsi-Chr4:31158328 2.24E-15 dispersed
Lsi04g02401 Lsi-Chr4:31158328 Lsi07g00222 Lsi-Chr7:2384536 9.98E-133 dispersed
Lsi04g02400 Lsi-Chr4:31151398 Lsi04g02401 Lsi-Chr4:31158328 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02401 K00128 - csv:101219569 754.207