Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02403 ATGGTTTTATGGAGCTCCAATTTCACTCTCCATTGCTCTGAGCTTCCTGTCTTCACTCCCCCTAAACCCTCCTTTCTCCCTTCCCATTCGAATCGATACCAGAATACGAGATCCAGTTCTGTTTCAGGCCCAAAAACAATGCATACGCCTGTTCTGTTGCTTCTCTCCATTCTCTTTGCGACTTTCGCCGTTTCCTTGTCCGACAAGTTTCTCATCGCCGATTGGGAGCAATTGAAGACCCTTCGGTTTGGTTCGTCGATTTTGTTTCCTGTTAAAGGAAATGTTTACCCTCTAGGGCATTTTACGGTGTTTCTCAACATTGGCAATCCGCCGAAGGTTTTTGAACTGGATATTGATACTGGGAGTGATCTCACTTGGGTCCAATGCGATGTTCAATGTAATGGTTGCACTTTGGTATGTTGGATTGGATCCTCTCCTAATCGATTTTTATTCGTTCCTCGTGATATGCTCTATAGACCGCATAATAACGCTGTAAGTCGTGAAGATCCATTGTGTGCGGCGCTTTCTTCCCCAGGTAAGGCCCTTCGCAAGAACACAAATGATCAATGTGGCTACGAGGTTGAGTATGCTGACCATGGATCATCCATTGGTGTATTGGTTAAAGATCTTGTTCCCATGAGACTCACTAATGGCAAACTCATTACTCCCAATTTGGGCTTTGGTTGTGGATATGATCAGGACAATGGTGATCTGCAACCGCCTCCTTCAATAGGTGGTGTCCTTGGCCTTAGTAGTAGTAAAGCTACAATTGTATCACAGCTAAGTGACCTCGGTCATGTAAGCAATGTAGTTGGACACTGCCTCGCCGGACGTGGGGGAGGATTTCTATTCTTTGGAGGAGACTTGGTCCCATCTTCATGGATGTCGTGGACGCCGATATTGCGCAATTCAGAAGGGAAGTACTCATCTGGACCTGCAGCGGTCTACTTTGGTGGGAGAGCTGTTGGAATTGGGGGCCTTACCCTGACTTTTGACAGTGGAAGCTCTTACACTTATTTCAACTCCCAAGTGTATGGAGCAGTAGAGAAACTGTTGAAGAATGATTTGAAAGGACAACCTCTAGAAATTGCATCTGATGATACAACCCTTGAACTGTGCTGGAAAGGTCCAAAATCTTTTGAATCTGTGGTTGATGCGAGAAACTTTTTCAAGCCCCTGGCCTTGACCTTTAAAAACTCCAAGAATGTTCAATTTCAAATACCTCCTGAAGCTTATCTCATAATCAGTAAACTTGGTAATGTTTGCTTGGGGATTATGGATGGAACCAAAGAAGGGTTGGGAAATGTTAACCTGATTGGAGGTAAGATGGTGTCAACAAAGAACCACTTTCAGATTCTTTTATCTTACATGCTTTCTTCCAACATTTCAACTTCTTCATTAAATTCATGGACAGATATTTCTATGTTGGATAAGATTGTAGTCTATGACAACCAGAGACAGCGAATTGGTTGGGCTTCTGAAAACTGCAATAGACCTCCCAAAAATGAAGCTTCTTGGTATGTGGCTTTTGCATTTGTTAAATACAGAGTGCTTTACATGAATTTTATTTTCATCCTCTTATATCAAGAAATTTTCACATTTTAG 1605 42.74 MVLWSSNFTLHCSELPVFTPPKPSFLPSHSNRYQNTRSSSVSGPKTMHTPVLLLLSILFATFAVSLSDKFLIADWEQLKTLRFGSSILFPVKGNVYPLGHFTVFLNIGNPPKVFELDIDTGSDLTWVQCDVQCNGCTLVCWIGSSPNRFLFVPRDMLYRPHNNAVSREDPLCAALSSPGKALRKNTNDQCGYEVEYADHGSSIGVLVKDLVPMRLTNGKLITPNLGFGCGYDQDNGDLQPPPSIGGVLGLSSSKATIVSQLSDLGHVSNVVGHCLAGRGGGFLFFGGDLVPSSWMSWTPILRNSEGKYSSGPAAVYFGGRAVGIGGLTLTFDSGSSYTYFNSQVYGAVEKLLKNDLKGQPLEIASDDTTLELCWKGPKSFESVVDARNFFKPLALTFKNSKNVQFQIPPEAYLIISKLGNVCLGIMDGTKEGLGNVNLIGGKMVSTKNHFQILLSYMLSSNISTSSLNSWTDISMLDKIVVYDNQRQRIGWASENCNRPPKNEASWYVAFAFVKYRVLYMNFIFILLYQEIFTF 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31170457 31174325 + Lsi04G024030.1 Lsi04g02403 662452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02403 534 Gene3D Acid Proteases 290 499 IPR021109 -
Lsi04g02403 534 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 52 444 - -
Lsi04g02403 534 PANTHER ASPARTYL PROTEASES 468 499 IPR001461 GO:0004190|GO:0006508
Lsi04g02403 534 ProSiteProfiles Peptidase family A1 domain profile. 101 492 IPR033121 -
Lsi04g02403 534 PANTHER ASPARTYL PROTEASES 52 444 IPR001461 GO:0004190|GO:0006508
Lsi04g02403 534 Pfam Xylanase inhibitor C-terminal 329 443 IPR032799 -
Lsi04g02403 534 SUPERFAMILY Acid proteases 93 444 IPR021109 -
Lsi04g02403 534 Pfam Xylanase inhibitor N-terminal 102 287 IPR032861 -
Lsi04g02403 534 Gene3D Acid Proteases 84 286 IPR021109 -
Lsi04g02403 534 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 468 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02403 - - - bhj:120084882 813.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02403 Lsi08g00444 CCT
Lsi04g02403 Lsi08g00444 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02403 Lsi-Chr4:31170457 Lsi10g00785 Lsi-Chr10:10689408 1.21E-120 dispersed
Lsi04g02403 Lsi-Chr4:31170457 Lsi04g02404 Lsi-Chr4:31177926 0 tandem
Lsi04g02403 Lsi-Chr4:31170457 Lsi08g00444 Lsi-Chr8:12076789 5.90E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g246 Blo01g01299 . . . . Bpe04g00164 . . Cmo04g02485 . . Cma09g00782 . . Sed03g0772 Cpe06g00616 . Bhi04g01897 Tan11g1261 Cmetu03g0048 . . . Lcy10g1235 Cla08g00605 Cam08g1018 Cec08g0608 Cco08g0719 Clacu08g0729 . Cre08g0537 Cone4ag1418 Cone7ag1520 . . Lsi04g02403 Csa04g01787 . Cme03g00531 . . . . . . . . Sed01g0005 . Cmo09g00773 . . Car04g02299 Car09g00691 Cpe01g02060 . Bhi09g02697 Tan01g4045 Cmetu07g0745 . Hepe01g2297 Mch11g0842 . Cla11g01544 Cam11g1608 Cec11g1636 Cco11g1638 Clacu11g1766 Cmu11g1582 Cre11g1999 Lsi08g00444 . Chy07g00625 Cme07g00832
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001489 0 2 1 0 0 1 3 2 1 2 2 3 2 3 3 2 3 3 2 3 2 2 2 3 2 3 3 6 7 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02403 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0