Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02409 ATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGAGGAAAAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTACTCCAACACTAATAACAACGGCACCAATAGGCACGAAGATGAGGATGAAGATGAAGACCTTGCTGCTGCTGAAAATGAGGAAATGGAACGTGATAACAATGACGATTCTGAGGACCCTCAGCTTAGCCTTCACCCCACCCCCAATTCCAGCATTCAGGAGACTGAACTCCTGTCGGATGATAAACTTCGAGTCTCCGAGTTTCCTCAGGTCCTTAAGCGGACTGTCACTCGGCCTCACTCTTCTGTGTTGGCCGTTGTGGCAATGGAGAGGACAAATCAGTACGGAGAGAGTAAGGGGATGCCCGGAAATTCCTTGATTTTGGAGAATGTGTCTTACGGGCAGCTCCAGGCACTGTCTGCTATGCCGGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGACGCTGGGAATGCCGCGTATGTAATGACTCCACCGCCGATTATGGAAGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGAGTACATGTTGTCCCTATGCATTCAGATTGGTTTTCACCCGCCACAGTGAATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGAAAATTGCCTGACCGCACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGGTTGGTTGATGGTGTCAGTAACGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAACCATGGAATAGCAGTTCATACTTGAGAGAAGATATGAATGGTGAGATTCACGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTCAAATTTGACAAACCAAAATGTAGGCTCAAGACAGCTGATGTCTATTCGGCAGTTCCATGCCACGATGACATTGATGGTTTATGTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCTATTGCATACTACCAATCACAGAAGGAGGTTAGTTTCTATCACCATATTGTACTCCATTGTTTATCTGACTCAGAGTACCTCAGGGTTGATGTTTTACTTTGCTCTGACTGCTTCCATGAAGGCAAATATGTTGCTGGCCATTCAAGCATTGATTTTCTGAGGGTGGACGTGGCGAAAGATTATGGTGAACTAGATAGTGAAAACTGGACTGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACCGAACATGTTGGGTCCAAATCTAAAGCTCAGTGCATTATACATTTTCTCCGTCTATCAGTGGAGGATGGTCTTCTAGAAAACGTTGATGTGCCTGGGGTTTCTCTCTCATCAAATTCTTCACGTGGAGAAGATAATGAGAAGTCACATTCAAATATGAACGGAAACATAGCAGGATCGTCCTCTCAAGATAATAAAGAGATGCATGATAGGCTCCCCTTTGCCAATTCTGGGAACCCAGTCATGGCGTTGAACAATATTCCATTGACCTTGAAAAGAAACCATGTTAAAAAAGAATGCCAGTGCAAAACTCTAATATTTCATATTTTTGCCGAAATCTTGGGCACCTGCCATCTAGTCCCTCCATGTATCTTTATCATAGATTACTTGAATCAAGACAATATAGCAGGGAAGAGAGCAGTGCGGAGGCTAGCCTGTTTGAAGCTGTTTGAGACCTGGAGCGAACTAGTAGTGGTTGCTTTTCTCGCATCTGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTCAGGACAGTGTAGCTTCTTCTGGGAGCATCTTTCAAATGGAGGGTTCTGTAAACGCTAATAATAGTTGGTCCCAATTGGAAGCATTCTTATTAAACACCCGCACCCAAAAGGAGCTTGTGCATAGGATGAAACAGGTTCCTACTGGCTACTTCCCACTTCCCAAAGTTAATCTTGTGGACGTCGTTATGATGAATGTGGATGTCAAACAAGTCAGAGACGGAGGCTCCTTTGGAGAACATCCAAATTCAATCGATCAAAAAGATGAAAACAAGGCAGAGACAGAAGCAACACTATTATCTTCTGAAAGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCTGCTGCAACAAAGGCGAAATTGTTTGCTGACCATGAAGAACGAGAAATCCAACGATTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTGGAGCTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTCGCAGAGCGAGCAAGAATGTTAGGTGTACAATTTGGACCTGCTGGAGTTACGCCACCTGCGAGTTTACCAGGCGTTATTCCTTCCATGGTAAACAGCAGTAACACAAACAGTAGGCAGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAGCAACAACCAACCACTTCACCCCCACATGTCATTCATGCCCCGACAGTCGATGTTTGGTTTGGGACAAAGGCTACCCTTATCGGCAATTCAGCAGCAGCAGCAGCAGCAGCCACCCTCCACCGCTTCTTCTAATCCCATGTTCAATGGTCCAAGCAATGCACAGCCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGA 2844 44.83 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYSNTNNNGTNRHEDEDEDEDLAAAENEEMERDNNDDSEDPQLSLHPTPNSSIQETELLSDDKLRVSEFPQVLKRTVTRPHSSVLAVVAMERTNQYGESKGMPGNSLILENVSYGQLQALSAMPADSPALLDQERADAGNAAYVMTPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPATVNRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVDGVSNEDLTRIVRFLDHWGIINYCAPTPSCEPWNSSSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKTADVYSAVPCHDDIDGLCDLDNRIRERLAENHCSSCSRSVPIAYYQSQKEVSFYHHIVLHCLSDSEYLRVDVLLCSDCFHEGKYVAGHSSIDFLRVDVAKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSRGEDNEKSHSNMNGNIAGSSSQDNKEMHDRLPFANSGNPVMALNNIPLTLKRNHVKKECQCKTLIFHIFAEILGTCHLVPPCIFIIDYLNQDNIAGKRAVRRLACLKLFETWSELVVVAFLASAIGPRVAASCAHASLAALSQDSVASSGSIFQMEGSVNANNSWSQLEAFLLNTRTQKELVHRMKQVPTGYFPLPKVNLVDVVMMNVDVKQVRDGGSFGEHPNSIDQKDENKAETEATLLSSERVKVAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPASLPGVIPSMVNSSNTNSRQNMISPPASQPSVSGYSNNQPLHPHMSFMPRQSMFGLGQRLPLSAIQQQQQQQPPSTASSNPMFNGPSNAQPSLSHPMMRPVTGSSSGLG 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31223204 31231420 + Lsi04G024090.1 Lsi04g02409 662458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02409 947 MobiDBLite consensus disorder prediction 848 886 - -
Lsi04g02409 947 ProSiteProfiles Myb-like domain profile. 432 482 IPR001005 -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 42 64 - -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 498 529 - -
Lsi04g02409 947 SUPERFAMILY Homeodomain-like 437 486 IPR009057 -
Lsi04g02409 947 SMART sant 436 484 IPR001005 -
Lsi04g02409 947 Pfam SWIRM-associated region 1 755 825 IPR032451 -
Lsi04g02409 947 Coils Coil 768 788 - -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 902 947 - -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 1 87 - -
Lsi04g02409 947 PANTHER SWI/SNF COMPLEX-RELATED 74 946 - -
Lsi04g02409 947 Gene3D - 199 286 IPR036388 -
Lsi04g02409 947 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515
Lsi04g02409 947 CDD SANT 439 481 IPR001005 -
Lsi04g02409 947 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Lsi04g02409 947 ProSiteProfiles SANT domain profile. 435 486 IPR017884 -
Lsi04g02409 947 Pfam Myb-like DNA-binding domain 438 480 IPR001005 -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 69 85 - -
Lsi04g02409 947 MobiDBLite consensus disorder prediction 848 883 - -
Lsi04g02409 947 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 74 946 - -
Lsi04g02409 947 Gene3D - 436 486 - -
Lsi04g02409 947 Pfam SWIRM domain 196 282 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02409 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 969.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02409 Lsi-Chr4:31223204 Lsi04g02426 Lsi-Chr4:31359280 8.59E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02409 Lsi_Chr04 FPKM 15.620576 15.791632 13.773632 12.692953 13.042452 13.538857 13.464978 22.414745 23.258799 21.796631