Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02414 ATGGGTGGAGAAATAGTACGTTTCCCTTTTCCTCGCTTTCGTTTCACTTGTTTCTCAGAATGTGTTGCATTATCTCAACCATTGTTCATTTTTCCGATTGACAGTCGACCGAAGCAAGTGAAAGACGTGGCGCATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTTCCCACCAACTATTTGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGATTATAGAGCCACTTGCATCAAGGTGTGCGAAGTTTAGGTTTAAGCCACTCTCTGTAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAACTTTGATATTGCAAACAAGGAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGACAAGTGTCTGGTTGATGGCGCGGATGAATATTTGCAACTGCTTGATGTGGTTAGTCAAACAATGCAAGCTTTAAGCAGTATGCAATTGTAA 864 43.87 MGGEIVRFPFPRFRFTCFSECVALSQPLFIFPIDSRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGIIEPLASRCAKFRFKPLSVEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQIIPREVVDALFTACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31276383 31281926 + Lsi04G024140.1 Lsi04g02414 662463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02414 287 CDD HLD_clamp_RFC 146 190 - -
Lsi04g02414 287 SUPERFAMILY post-AAA+ oligomerization domain-like 192 277 IPR008921 GO:0003677|GO:0006260
Lsi04g02414 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 192 IPR027417 -
Lsi04g02414 287 Pfam ATPase family associated with various cellular activities (AAA) 65 116 IPR003959 GO:0005524|GO:0016887
Lsi04g02414 287 CDD AAA 46 118 - -
Lsi04g02414 287 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 130 281 - -
Lsi04g02414 287 PANTHER REPLICATION FACTOR C SUBUNIT 4 35 125 - -
Lsi04g02414 287 PANTHER REPLICATION FACTOR C SUBUNIT 4 130 281 - -
Lsi04g02414 287 Gene3D - 33 131 IPR027417 -
Lsi04g02414 287 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 125 - -
Lsi04g02414 287 Coils Coil 287 287 - -
Lsi04g02414 287 Pfam Replication factor C C-terminal domain 193 277 IPR013748 -
Lsi04g02414 287 Gene3D - 192 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02414 Lsi-Chr4:31276383 Lsi08g00447 Lsi-Chr8:12109074 3.50E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02414 K10755 - csv:101221224 433.335