Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02415 ATGGCAATTCCAGTCATTGATTTCTCTAAGCTTGATGGAGAAGAAAGGGCCAAGACATTGGATCAAATAGCGAATGGCTGTGAAGAATGGGGATTCTTTCAGCTCCTAGAGAGGGTGAAGCGGATTTCCTCAGAGTGCTACAAGGTGGAAAGGGAAGAAAGTTTCAAGAGTTCAAAACCTGTGAAGCTCCTGAATGATTTGCTGGAGAACAAGAGTGGTGAGAAGCTGGAAAATCTTGATTGGGAAGACGTCTTCCTTCTCCATGATAACAACGAATGGCCATCCAACATTCCTGGATTCAAGGAAACCATGAGAGAGTACAGATCGGAACTGAAGAAGCTAGCTGAAAAAGTGATGGCAGTGATGGATGAGAACTTAGGTTTACCTGAAGGATACATAAAGGCTGCCTTCAATGGTGGCGAAGGGCTGGAAAAGGCCTTCTTCGGCACCAAAGTCAGCCACTACCCACCATGCCCACACCCGGAGCTGGTGAATGGCCTCCGTGCCCACACTGATGCCGGTGGTGTCATCTTGCTCTTCCAAGACGACGAGGTGGGAGGCCTTCAAATCCTGAAAGATGGGCAGTGGATAGATGTCCAGCCATTACCCAACTCCATAGTCATCAACACAGGTGATCAGATTGAGGTCCTGAGTAATGGCAGATACAAGAGTGTTTGGCACCGGGTTTTAGCCACCCCAAATGGGAACAGGAGATCGATTGCTTCGTTTTACAACCCATCAATGGAAGCCACCATAGCTCCTGCAGCACAGCTGGTGGATAAAGCAAACCAGGAGGTGGAAGAAGGATATCCCAAGTTTGTGTTTGGAGACTACATGTCAGTTTATGCTGAGCAGAAGTTCCTCCCAAAGGGTCCAAGGTTTCAAGCTGTCAGGGCAATGTGA 903 48.17 MAIPVIDFSKLDGEERAKTLDQIANGCEEWGFFQLLERVKRISSECYKVEREESFKSSKPVKLLNDLLENKSGEKLENLDWEDVFLLHDNNEWPSNIPGFKETMREYRSELKKLAEKVMAVMDENLGLPEGYIKAAFNGGEGLEKAFFGTKVSHYPPCPHPELVNGLRAHTDAGGVILLFQDDEVGGLQILKDGQWIDVQPLPNSIVINTGDQIEVLSNGRYKSVWHRVLATPNGNRRSIASFYNPSMEATIAPAAQLVDKANQEVEEGYPKFVFGDYMSVYAEQKFLPKGPRFQAVRAM 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31289051 31291085 + Lsi04G024150.1 Lsi04g02415 662464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02415 300 SUPERFAMILY Clavaminate synthase-like 1 292 - -
Lsi04g02415 300 Coils Coil 97 124 - -
Lsi04g02415 300 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 142 246 IPR005123 -
Lsi04g02415 300 Gene3D - 2 300 IPR027443 -
Lsi04g02415 300 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 36 IPR026992 -
Lsi04g02415 300 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 298 - -
Lsi04g02415 300 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 298 - -
Lsi04g02415 300 Pfam 2OG-Fe(II) oxygenase superfamily 153 246 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02415 K05933 E1.14.17.4; aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] - csv:116406307 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02415 Lsi-Chr4:31289051 Lsi11g01670 Lsi-Chr11:24956987 7.33E-64 dispersed
Lsi10g00274 Lsi-Chr10:4387234 Lsi04g02415 Lsi-Chr4:31289051 3.68E-37 dispersed
Lsi04g02415 Lsi-Chr4:31289051 Lsi10g01570 Lsi-Chr10:20163125 7.57E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g217 Blo01g01306 Blo12g01119 . Bda03g00022 Bpe02g00631 . Bma04g00019 Bma01g02087 . . Cma01g01368 Cma09g00772 . . . Cpe06g00608 . . . . . . . . . . . . . . . . . Cone17ag0821 Cone20ag0425 Lsi04g02415 Csa04g01778 . . Blo17g00170 . . Bda13g01469 Bpe02g01655 Bpe14g00396 . Bma02g00205 . Cmo01g01420 Cmo09g00764 . . . Car09g00682 . Cpe02g00569 Bhi09g02709 . . . . Mch11g0852 . Cla11g01554 Cam11g1619 Cec11g1646 Cco11g1647 Clacu11g1776 Cmu11g1592 Cre11g2010 . . . Cme07g00816
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003595 4 1 3 4 3 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 2 2 1 1 1 1 1 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02415 Lsi_Chr04 FPKM 2.055616 2.289266 0.916571 1.511123 0.0 0.0 0.0 0.306053 0.395963 0.624153