Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02418 ATGGGGCTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGTATCACTCCCATTATGACCCTCCTCGGACGTGTCTACTACCCGGACCGACACTACGAGACTCCGGCCACCGTCAAATCCGCTATGCTCGCCGTGGCCCTTCTGGGAACGGCGATGGGTCAACTGGTGTTCGGCATACTCGGAGATCGAGTGGGACGGCGACGCGTGTACGGACTCGCATTGGCGCTGATGGTGGTGAGTTCCATCCAATGTGGGTTCTCAATCTGCACCACAAGGAGCTGTGTCCTTGTGAGCCTAGGGTTTTTCAGGTTCCTTCTGGGGCTGGGAATTGGGGGAGATTACCCATTGTCGGCGACCATAATGTCGGAGTTCGCTAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTTTCGATGCAAGGATTTGGGATCTTGGCCAGCGCCACGGTCACCATGATCGTGTGCTCCATATTCGATCGGGCTTCCAATTACCCAGACAGTAATCGAACACCGATGGGGGCGGATATTGCTTGGAGGCTGATTCTCATGCTCGGCGCTGTTCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACTGCCAGCCCTATGTCCCCTTCCCCCCCAAACTTCTCCTTCTTTTCCAACCAATTTCTTCGTCGACATGGCCGCGATCTCCTTTCCTGTGCCGCCTCCTGGTTCCTCGTCGACATTGTCTTCTACAGCAGCAACCTCTTCCAGTCCAAAATCTACACCCAATTCCTTCCTTCCAACCAAAACTCCATCAACGTCTACCGTCAAGCTTTCAACGAAGCTAGGCTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCTGGCTACTGGATCTCCGTCTTTTTCATCGACCGTCTCGGTCGAGTCACCATCCAAATCCTCGGATTTCTCTTTATGGCCCTTGGCTATCTCGTCATCGCCATCCCCTACAACTCTTTCTGGGTTTCCGATAAACACAAATACGGCTTCATGTTATTCTACTGCCTCACCTTCTTCTTCTCAAACTTTGGCCCCAACACCACCACATTCATTCTCCCCGCCGAGCTCTTTCCCGCTAGGTTTCGCTCCACCTGCCATGGAATCTCTGGTGCCGCCGGCAAAATCGGGGCCATCATCGGAGCCGTGGGCTTCCTTTGGGCCTCGCACGACCGGAAGGATGACGGAATTGGGATGAAGGCGTCGTTGATGTTGCTTGGTGGGGTGAGTCTTGCAGGAGTGGCGATCACGTATTTCTTCACCAGAGAGACCACGGGAAGGTCGTTGGAAGAGAATGAGAAGGAAGATGAATACGCTGGGATTTTGTTTCTCAGATGCTTTCACTTTCACCAAACTAATACTGCTACTGCTACTGCTACTACTACTGCCTGCTCCCGACCGTCTATTGCTCAACACGACGACATGTCGTCACGTTCTACCTCCAACTCCATTCCAACTACTACGACACCTATTCATTATTAG 1572 53.18 MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLLGRVYYPDRHYETPATVKSAMLAVALLGTAMGQLVFGILGDRVGRRRVYGLALALMVVSSIQCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASATVTMIVCSIFDRASNYPDSNRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETASPMSPSPPNFSFFSNQFLRRHGRDLLSCAASWFLVDIVFYSSNLFQSKIYTQFLPSNQNSINVYRQAFNEARLQAIVAVCSTIPGYWISVFFIDRLGRVTIQILGFLFMALGYLVIAIPYNSFWVSDKHKYGFMLFYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDRKDDGIGMKASLMLLGGVSLAGVAITYFFTRETTGRSLEENEKEDEYAGILFLRCFHFHQTNTATATATTTACSRPSIAQHDDMSSRSTSNSIPTTTTPIHY 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31310179 31313197 - Lsi04G024180.1 Lsi04g02418 662467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02418 523 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 236 467 - -
Lsi04g02418 523 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 229 - -
Lsi04g02418 523 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-9-RELATED 1 229 - -
Lsi04g02418 523 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lsi04g02418 523 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-9-RELATED 236 467 - -
Lsi04g02418 523 Pfam Major Facilitator Superfamily 27 412 IPR011701 GO:0022857|GO:0055085
Lsi04g02418 523 MobiDBLite consensus disorder prediction 498 523 - -
Lsi04g02418 523 CDD MFS_PhT 22 454 - -
Lsi04g02418 523 Gene3D MFS general substrate transporter like domains 17 471 IPR036259 -
Lsi04g02418 523 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 455 IPR020846 GO:0022857
Lsi04g02418 523 SUPERFAMILY MFS general substrate transporter 9 466 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02418 Lsi-Chr4:31310179 Lsi05g01728 Lsi-Chr5:24728682 1.98E-164 dispersed
Lsi04g02418 Lsi-Chr4:31310179 Lsi05g01727 Lsi-Chr5:24715306 4.06E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02418 K08176 - csv:101218554 853.203