Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02421 ATGTCGGGATCCGAGACCGGAGTGATGTCCAGCGGCGAACCTTTCACCATCGGTCTCCAGAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGCCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTGAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCGATGGCTCCTGCGGTCCGCTCTCCCGCTGCAACTCAGTCGAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCTCTCCAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCGTCTAGCAAAAAGCAGCAGTTGGATGGTTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATTATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCTAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACTGTAACTTACGAGGGGCGATTCGAAATTTTGTCACTATCTGGGTCCTATCTCCTCTCCGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCATCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGGGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGCCGCCTGTTACTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGGGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCTGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAACAACACCATATCTTGGAAGTGA 1056 53.88 MSGSETGVMSSGEPFTIGLQKNSVQSQQPVMQGMHLPFGADGVYKPVAAASPTYQSSGVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFSPPPTAAPPSGGSASPTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQVNQIEQPPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTISWK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31318792 31322400 - Lsi04G024210.1 Lsi04g02421 662470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02421 351 MobiDBLite consensus disorder prediction 310 351 - -
Lsi04g02421 351 Gene3D - 167 297 - -
Lsi04g02421 351 MobiDBLite consensus disorder prediction 1 26 - -
Lsi04g02421 351 CDD DUF296 166 280 IPR005175 -
Lsi04g02421 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 288 - -
Lsi04g02421 351 MobiDBLite consensus disorder prediction 72 165 - -
Lsi04g02421 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 16 346 - -
Lsi04g02421 351 ProSiteProfiles PPC domain profile profile. 161 301 IPR005175 -
Lsi04g02421 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Lsi04g02421 351 MobiDBLite consensus disorder prediction 317 351 - -
Lsi04g02421 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 346 IPR039605 GO:0003680
Lsi04g02421 351 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Lsi04g02421 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02421 Lsi08g00770 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02421 Lsi-Chr4:31318792 Lsi08g00770 Lsi-Chr8:16089755 5.31E-118 dispersed
Lsi11g00412 Lsi-Chr11:4296550 Lsi04g02421 Lsi-Chr4:31318792 1.69E-47 dispersed
Lsi04g02421 Lsi-Chr4:31318792 Lsi09g01558 Lsi-Chr9:23699625 1.34E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02421 - - csv:101207513 593.193