Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02422 ATGGAGAAGGGGCCGACTACTGTTTCAGCCATGGAAGCGTTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACATACGGCAAAGTTTATAGGGCAAGGGAGAAGGCGACCGGCAAGATTGTGGCGCTCAAGAAGACGCGCCTCCATGAGGATGAGGAAGGTGTTCCTCCCACCACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCCCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGGAAAACCGTCCTGTACTTGGTGTTTGAATACATGGATACCGATCTGAAGAAATTTATCAAGAGTTTTCGTCATACGGGAGAAAATATTCCCTTGAACACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTACACAGGGATCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGGTTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGGCAAGTCATTTTTTTCTTCAGAGTTGTTCTTTACACATGATATTAACCCTCTGGTATAGAGCTCCCGAAGTTTTGTTGGGGGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCCGAACTCGCCACCAAGCAGGCTCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAGGTCTGGCCTGGTGTAAGCAAACTAATGAACTGGCATGAATATCCCCAGTGGAACCCCCAAAGCCTTTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTTGATCTGCTTTCACAAATGTTGAGGTATGAACCCTCAATGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGAATATCTCTGA 978 45.81 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGENIPLNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEASHFFLQSCSLHMILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKGLDLLSQMLRYEPSMRISAKKAMEHPYFDDLNKEYL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31327953 31330516 + Lsi04G024220.1 Lsi04g02422 662471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02422 325 PANTHER - 7 322 - -
Lsi04g02422 325 SUPERFAMILY Protein kinase-like (PK-like) 9 321 IPR011009 -
Lsi04g02422 325 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Lsi04g02422 325 ProSiteProfiles Protein kinase domain profile. 14 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02422 325 Pfam Protein kinase domain 14 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02422 325 SMART serkin_6 14 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02422 325 Gene3D Transferase(Phosphotransferase) domain 1 102 324 - -
Lsi04g02422 325 PANTHER CELL DIVISION PROTEIN KINASE 7 322 - -
Lsi04g02422 325 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Lsi04g02422 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01645 Lsi-Chr1:14915745 Lsi04g02422 Lsi-Chr4:31327953 1.83E-126 dispersed
Lsi04g00138 Lsi-Chr4:1583870 Lsi04g02422 Lsi-Chr4:31327953 2.37E-112 dispersed
Lsi04g02422 Lsi-Chr4:31327953 Lsi11g00111 Lsi-Chr11:1193734 2.03E-94 dispersed
Lsi09g01018 Lsi-Chr9:14069139 Lsi04g02422 Lsi-Chr4:31327953 9.20E-12 dispersed
Lsi04g02422 Lsi-Chr4:31327953 Lsi08g01606 Lsi-Chr8:24018415 1.38E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83622 PF00069 Pkinase 7.90E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02422 K07760 - csv:101208001 622.083