Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02425 ATGGCGACGGTGGCGATGAAGGGCAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGATTATATTGTCCACGGAACTGTCAGGGAGCCCAGCGACGCTAAGTATGATCACTTGAGAAAACTTGAGAAAGGGACTGAGAATTTGGAGCTGTTTAAGGCTGATTTACTGGACTACGAGTCTCTGCGTTCTGCAATTGCAGGATGTGATGGGGTTTTCCATGTTGCCAGTCCAGTTCCTTCCACAACTTCATCAAACCCCGAGAAACATCTCATTGACGAAAGTCGAAAAGAGAACTATAGGAGGAGAGGGAGGGGCAAACTAGCTCTTCACTTTACTAGAATCATAAAGGATAAAGTCCATCATCAAGTAACTGGGAAATTGCAGTCTTCTCAACAAAACAGACTAAACACCACTAGAAGGCATATAAATGACCCTATCGTTCCTTTAAATCCTGATTTTGCTACAAGCTCAAGAGTAAAACTGTTGGAATTTGAACATCACAGTTCAATATTAGCTAAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACGCATAATGTGCTTGAAGCTTGTGTCCAAGCAAAAATTAAGCGAGTAGTTGTAGTATCCTCAGTCACTGCAGTGTTTTTCAATCCCAGTTGGCCTCAAGGTCAAGTAATGGATGAAAGTTGTTGGTCCAATATGGAGCACTGCAGAGCTACTAAGAACTGGTATTTTCTGGCAAAAACAAAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGATGTGGGCTCGACGTTGTGACTATTTGTCCTACTCTTGTTATCGGGCCGATTTTGCAGCCAACAGTCAACGCCAGCAGCTTGGTTCTTCTCAAAATTCTAAAAGAAGGATACGAGTCGATGGAAAACCGGCTACGGATGTTAGTTGACGTACGAGATGTAGCAGAGGCGCTAATTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTACATCTGTTCCGCGCATACAATTGAGACAAGGGAGCTGGTGGATGCATTGAAGAGGAAGTACCCTGATTATAGCTATCCAAAAAAGTTGAGTGAAGGGAAGGCGGAGTCGGTAAGTCTGAGCTCGGAGAAGCTGCAAAGATTGGGTTGGAAGTATCGGGCATTAGAGGAGACGCTTGCAGATGCTGTTCAGAGTTTCAAAGACGCCGGCATGTTGGAGTGA 1227 44.99 MATVAMKGKVCVTGAGGFIGSWVVKLLLSRDYIVHGTVREPSDAKYDHLRKLEKGTENLELFKADLLDYESLRSAIAGCDGVFHVASPVPSTTSSNPEKHLIDESRKENYRRRGRGKLALHFTRIIKDKVHHQVTGKLQSSQQNRLNTTRRHINDPIVPLNPDFATSSRVKLLEFEHHSSILAKTEVIEPAVKGTHNVLEACVQAKIKRVVVVSSVTAVFFNPSWPQGQVMDESCWSNMEHCRATKNWYFLAKTKAESEALEFGRRCGLDVVTICPTLVIGPILQPTVNASSLVLLKILKEGYESMENRLRMLVDVRDVAEALILLYEKGEAEGRYICSAHTIETRELVDALKRKYPDYSYPKKLSEGKAESVSLSSEKLQRLGWKYRALEETLADAVQSFKDAGMLE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31351954 31356529 + Lsi04G024250.1 Lsi04g02425 662474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02425 408 Pfam GDP-mannose 4,6 dehydratase 12 88 IPR016040 -
Lsi04g02425 408 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 104 - -
Lsi04g02425 408 Gene3D - 166 408 - -
Lsi04g02425 408 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 5 104 - -
Lsi04g02425 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 404 IPR036291 -
Lsi04g02425 408 CDD FR_SDR_e 10 385 - -
Lsi04g02425 408 Pfam NAD dependent epimerase/dehydratase family 179 332 IPR001509 -
Lsi04g02425 408 Gene3D - 3 107 - -
Lsi04g02425 408 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 184 407 - -
Lsi04g02425 408 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 184 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02425 Lsi-Chr4:31351954 Lsi05g00774 Lsi-Chr5:11002724 2.51E-19 dispersed
Lsi04g02425 Lsi-Chr4:31351954 Lsi03g01266 Lsi-Chr3:23357447 2.41E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02425 - - bhj:120087265 407.912