Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02427 ATGACGGTCAGGGTTGAATTTGGAGATGCCACTACACCTGTGGATTCTGCTGATGCCCCCACCATTAGTCGGGCCTTTCCCCACACTTACGGTCAACCATTGGCCCACTTTCTCAGGGCAACTGCTAAAGTCCCTGATGCTCAAATTATTACTGAACATCCAGCCATCCGGGTGGGAATAGTTTTCTGTGGAAGGCAATCCCCTGGAGGCCATAACGTCATATGGGGGCTTCATAATGCTCTCAAAGTCCACAACCCAAATAACTGGTACATTGAGATAAGCTGTCACTTCTTTCAACAGGTGGTTCTGAAGGTTAATGCTGCACTCAAGACATGCTTAGATTTGAAGCTGGATGGTCTCGTCATAATTGGCGGAGTGACGTCAAACACTGATGCTGCTCAACTTGCCGAAACCTTTGCTGAAGCTAAATGCCCCACGAAGGTCAATTCTCAGCTAATCAGCAATGTGTGCACTGATGCCCTGTCTGCAGAGAAGGTTATTCTTGGTGAGGAGGTGGCTGCATCAAAACTTACTCTTTTTGATTTGACGACACAGATATGTGATGCTGTTCAGGCTAGAGCACAACAAGACAAGTACCATGGGGTCATCTTACTGCCCGAAGGACTCATTGAAAGTATTCCTGAAATCTATGCCCTTTTGAAGTTGCTACTTCATCCCGAATCAGATGACTCTGCTCAGTTATCTCAGAAAGAAGGGACTTATAAGGGGAAGAAATTCAATGCAATTTGCCACTTCTTTGGTTACCAGGCTCGGGGATCTTTACCTTCAAAATTTGATTGCGACTATGCCTACGTTCTTGGGCATGTTTGCTACCATATCCTAGCTGCTGGCTTGAACGGTTACATGGCTACTTTAACTAACCTGAAAAATCCTGTGAACAAATGGCGCTGTGGTGCTGCCCCGATTGCAGTTGGGTTTTCTTCCTTTCATGCTGCCATGATGACTGTGAAGCGTTGGGCTCAAAACCCTGGAGCATCATCCATTGGAAAACCTGCTATTCACCCAGCTACTGTGGATTTGAAAGGGAAAGCATACGAGCTATTGAGACAAAATGCGAGTCAGTTTCTTATGGACGATCTCTATAGAAACCCTGGACCTCTTCAGTTTGATGGTCCTGGTGCTGATGCTAAGCCCGTCTCCTTGTGCGTTGAGGACCAGGATTACATGGGCCGCATCAAGAAACTTCAGGAATATCTTGATAAGGTCCGAACCATTGTAAAACCAGGGTGTTCGCAGGAGGTTCTTAAAGCAGCATTAAGCGTCATGGCATCAGTAACCGACGTTCTCTCGGTTATGTCTTCAAGTCCATTCAGCGGAAAAGCATCATTAGAAGGATAA 1359 46.21 MTVRVEFGDATTPVDSADAPTISRAFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVIWGLHNALKVHNPNNWYIEISCHFFQQVVLKVNAALKTCLDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTTQICDAVQARAQQDKYHGVILLPEGLIESIPEIYALLKLLLHPESDDSAQLSQKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPIAVGFSSFHAAMMTVKRWAQNPGASSIGKPAIHPATVDLKGKAYELLRQNASQFLMDDLYRNPGPLQFDGPGADAKPVSLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLSVMSSSPFSGKASLEG 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31365489 31370787 - Lsi04G024270.1 Lsi04g02427 662476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02427 452 Gene3D Phosphofructokinase domain 163 267 IPR035966 GO:0003872|GO:0006096
Lsi04g02427 452 Gene3D Phosphofructokinase domain 314 391 IPR035966 GO:0003872|GO:0006096
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 104 148 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 2 90 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 166 221 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 147 165 - -
Lsi04g02427 452 Gene3D - 94 150 - -
Lsi04g02427 452 Gene3D - 1 93 - -
Lsi04g02427 452 SUPERFAMILY Phosphofructokinase 4 390 IPR035966 GO:0003872|GO:0006096
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 2 90 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 104 148 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 147 165 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 236 442 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 166 221 - -
Lsi04g02427 452 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 236 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02427 K00895 pfp, PFP; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] - csv:101208728 751.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01076 Lsi-Chr2:11961241 Lsi04g02427 Lsi-Chr4:31365489 6.89E-21 dispersed
Lsi02g02846 Lsi-Chr2:34632995 Lsi04g02427 Lsi-Chr4:31365489 7.87E-15 dispersed
Lsi04g02427 Lsi-Chr4:31365489 Lsi01g00461 Lsi-Chr1:3838534 6.31E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02427 Lsi_Chr04 FPKM 3.805923 3.886841 4.220213 5.190661 4.050251 3.557431 4.704515 5.790342 5.321324 6.392519