Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02428 ATGCGGCTGAGAAATAGGGATGCCGCAGTAAGATCTAGGGAGAGGAAAAAGATGTACGTAAAGGATCTAGAGATGAAGAGTAAATTTCTTGAAGGTGAATGCCGGAGATTGGGGCGTTTGCTCCAATGCTACTGTGCTGAGAATCAAGCCTTACGCTTTAGTCTACAGATGGGAGGCGCTTCTGGTGCTTCACTGACCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTAGTGGGCACCGTTTGCCTGTTGACCCTTCCTCAACTCCCACAATCAACTCTGGAACCTGTTCCAAGAGTAAGAATGGAGAACGAAGGTCCAGGAAGCGCGCCTCTCAACGAGAGAGAAAATAACGACTCCAGATACTCATACTCATCATTACAAACTAGGAGGTGCAAAGCGGCAAGAACAAGGATGAAACCAAGTATGTTGGATGCAATGCTCGGGCCTAGTTCGGCTCTGATTTCGATATAA 501 48.1 MRLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGASLTKQESAVLLLESLLLGSLLWLVGTVCLLTLPQLPQSTLEPVPRVRMENEGPGSAPLNERENNDSRYSYSSLQTRRCKAARTRMKPSMLDAMLGPSSALISI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31372866 31375476 - Lsi04G024280.1 Lsi04g02428 662477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02428 166 SUPERFAMILY Leucine zipper domain 2 53 IPR046347 GO:0003700|GO:0006355
Lsi04g02428 166 Gene3D - 1 57 - -
Lsi04g02428 166 MobiDBLite consensus disorder prediction 120 137 - -
Lsi04g02428 166 PANTHER BZIP TRANSCRIPTION FACTOR 60 2 153 - -
Lsi04g02428 166 MobiDBLite consensus disorder prediction 106 137 - -
Lsi04g02428 166 CDD bZIP_HY5-like 2 49 - -
Lsi04g02428 166 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 2 15 IPR004827 GO:0003700|GO:0006355
Lsi04g02428 166 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 2 153 - -
Lsi04g02428 166 Pfam bZIP transcription factor 2 50 IPR004827 GO:0003700|GO:0006355
Lsi04g02428 166 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 52 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02428 - - - csv:105435330 275.404
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012243 1 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 0 1 2 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25268 PF00170 bZIP_1 4.40E-08 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02428 Lsi_Chr04 FPKM 6.40262 3.365065 0.802408 0.7318 0.0 0.0 0.553835 0.803497 0.422822 0.692173