Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02433 ATGGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAATCCATCGCCAATAGCCCACTTGGAAAGTCGCTCCAGAGACAACTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGAGAGCTCATGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAG 306 46.08 MGVLIFSAIPFTAVKSIANSPLGKSLQRQLEKKKKSAVANSSKFKALAEEARKESSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAALKYCMLVGLC 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31387743 31397272 + Lsi04G024330.1 Lsi04g02433 662482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02433 101 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 2 92 - -
Lsi04g02433 101 SUPERFAMILY Chlorophyll a-b binding protein 56 92 - -
Lsi04g02433 101 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 92 IPR001344 GO:0009765|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02433 K14172 LHCB7; light-harvesting complex II chlorophyll a/b binding protein 7 - csv:101209460 170.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02433 Lsi-Chr4:31387743 Lsi11g01355 Lsi-Chr11:22168602 6.58E-11 dispersed
Lsi04g02433 Lsi-Chr4:31387743 Lsi01g00172 Lsi-Chr1:1668479 5.72E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g26 . . . . . . . . . . . Cma09g00012 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02433 Csa04g02748 . . . . . . . . . . . . Cmo09g00013 . . . Car09g00012 . . . . . . . . . Cla11g01861 Cam11g1928 Cec11g1955 Cco11g1967 Clacu11g2093 Cmu11g1896 Cre11g2304 . . Chy07g00436 Cme07g00015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012609 0 2 1 1 1 0 0 0 0 2 1 0 1 1 1 1 0 1 0 1 2 1 1 2 3 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02433 Lsi_Chr04 FPKM 5.211382 4.71013 2.571203 0.0 3.023784 2.203076 4.895774 4.681565 4.602524 3.728012