Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02435 ATGATGGCTGACACGGATGTGCTTGCCGACACATCTGAGGTTAACGAGAAGTGTGCCTTGGATATGAGTACCTACGAGAATTTGCCTAAAGGTTGCAATGCAGCATCCCTTCACTGTGCTACTCCCATTCCTAAGGATGATACCGATGGTTCTTACGTTTTCGTTAGCTCCACCGATGCTGCTACTTCCGATGATCACGTTGCTTCGGATCTTAATGGGCAAGCAAAGTGTGATACGGAGATTGAGGTTCGTAATCGGGAATTGAATACTGATGTCGGTAGGAAACCTGAATCAATTTTCGTTTCTGATGCATTGAAGGATTCCCAATTCAAATTTTCTGAGCATGTGAAAGAGAGTGAAGCAATTCAGGATGAGATCAGAGTGGCGGATGTCCTTCAATCTTCTGAAGCCAAGGTGGATGAAGCGGAACCTGGTCTGGATTCTTCTCAAACGGTGGAAGAAACTCGAATCCTAGAGGACCGGACTATCAACGAATCTTTTGATGCGGAGACAAATTCTGGCGAAATCCATGGGGTACTGTCTCCTCAAGAAGTTGAAGACAATCAGATTCAGGAGGAAAATCAAAGAATTTCTACCTCTGGATCTTCTAACACCGATGCAAATCATTGTGGAGAAATCGAGGTGGAGTCTTCCCAAATGGCGGAAGATATTCAAATTCATGAGGATAATGGACTTGTGGAAATCATGAAGTCTTCTGATACTGAGACAAATCATGTGATAAACATTGAGGCGGAGTCTTCTCAGAAGGCAGATGGCATCCAGATTCACAAGGAAAATGGAACGGTTGCAATCAAGTTTTCTGATACTGAGTCAAACCCTGGAGAAGAAATTGAGGTGGAGTCTTCTCAAAAGGCAGACGACATTCAGAATCACGAGGAAAATGGCATAATGAAAGCCTCTTCTGATACCGTGGCAAGTCCTAGGTCAGAAATTGAGGTGGAGTCTTCACGGGAGGTTGAAGACATTGAGATTCAGGGGCAAAATGAAGTAGTGGATGCCATCAAATCTTCTGCTACAGTGGAAACGCGTGGGCAAGAAGGTGAAGTAATTCCCGAGTATAATGAAACAGTGGCTATCAATGAATTATCTGATAACATACATAACAGCAGTGAACAAACTGAGATGGAATCTTTCGGGAGAGAGGAAGGCATTCGAGAATCAGAAGATGCAAATTTGGAGGCTGCCGACTGCCATTGTGTTAATGGCAAAGAGAAGGTTGATGAGATGGTAAATAAAGCTGTGATAAGCGACCCTGTGGGAGGAATAGGAGAATCTCAAATTATAAATATGGGTGCTGCTAAATCTGACCTAGATCATTCTGATGATTCAATGGAAGACGTTAAGAGGGAATGTACATCAGGGGTTGCCTTAAATGAAGAGAACTCTGAGAAAACTCAATTTACAATTAGTCCGGATGGTGAACATTACCAGGTTGTTGGTGAGGAACAAGAAAGTTTAAAAAATGAAGTTTCTCTTTTAGAACCATCAGAAGAAAACAAAGCGGGTGTGGAGCAGCATTTGACAGCAGCTCCTAGTCCACTGGTCAGTTCAGAAGACATAAATGGTTCTATCTCGATTAGCACGGAAGATGGCTTGCCAACTAGTATGGATCAAGATGACCCCTTGGGAACTATTGATGACAAAGACACTGTAGCTAACAGGACCAGCTTCCATGACCACACTGAATCCTCATCTGGCTCTGTAGATTGTGATATTGCTACTGTTGAATCTCATAAATTATCTCCTACGGTGCTTGTTAGTGATCCAATAGTAGAGTTAAATGATATTACTGTGAATGATGAACAAGAGGTGAATCATGTGTTGGAACTAGAAGAGAATTCAAAAATGGCTTTTCATCTTAAAGTGGACGAATGTGTCAAGGTTGAAGTTTTGGAAGGTACGGTCTCTGGAAATGGAGATGAGGTGCCCACTGCACTCAACGAATCTAGAATTTCTTGTGGTGATGACTTTGTTGCTGGCAGTCAATTAATCGCTGAGGATATTGAATCTGTGGAAAGCATTAACACAGCAGTATCTGCTGTTGTGATAGGAAATACTTCAATTGAAATAAGGGAACTGGGCTCTACGAATTGTCCTAATGATCCAGTAGTGAGATCTGATCTTGATGTCGAGGATTGTAAAATGTCTGAAATTATGGCTTCTGCTGGTGATGTTGTCCAACCGGATAAAGAAGTCAGTGAAAATCATGAGGTTGGTTTTCTTGGTAACTCTAATTTTGAAACCAAGTGTCAGAATGGTCATGTTGAAAAAGATCACCAAGCAACTTTCCATAGTAATGATTTTACGTCAATTGAATGTCAAGAGAGAGTTTCCACTGTTCCTGAAGTTCCTAATGGTATCAATAAATCTTCTGCAATTCAACTAAGTTCTGCTGTTGCAACAGACTCAGAATTGCATGATGACGAAAGTAGCTCAAGTCCAACTGCTAATGAGAAATCAGGAGACGACATCAAGATTCCATCCTCCATAGGAGGTGGTAGCAGAAATATACCTGGCGATGATTGCAGTGTGTCAAAAACTGAAGTTCTCAAGGGTTCTATTGTAAACGATGAAGGGAATCTGAACTCAATGTCTGATGTTGTCTCTGAAACTAAACCAGCAGCAGAAGAAACTAAGGTCATTCATGAGGGTTGCCAGAATGAACCTTCACCTATTTCTCCAGAAGGTTCTGGTGATACTTTAACGGGGCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTAGATTTGATGACAAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATTGGAAGACCAAGGATCGAGATACCATTCGGGTTCAAATACAGACAATGAGGGCTGCATGGAAAGTGTTGAGTGATAATCTTGAAGCAGCAGTGTCGGAAGGAAGAGCTGCCAGAGACTTGCTCAAGTCTAAAAGACTGGAGATAGAATCTGTTCAATCAGTGATAACAAAAGTGAAGAATGCCATGTCTGTTGAGGATATTGATGGCAGGATACGCAACATTGAACATATGATAGAGCATGAAACACTGCCATTAAAAGAGGAAAAACAATTAATTCGTGAAATCAAGCAATTGAAGCAGCTGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGATGAGCTTCAACAGGCATTAGACCAGAAAGACCAGATTGAAGAGCGCCTTAAGCTATTAAGAAAGGAGATGGATTTACTGAGAGACAATGTTCTGAAAGCCGAATCAGTTATAAAGGCTGCCAAGAAGAAATATAATGATGAAAGCATTAAGCTGGATGAATTGCAATCCCAGTTTAAAGCAGCAGATAAGATTCGCCAAGAAGCATATGCTAATTTACAGAGTATGAGGAAGCAATTATACGAGAAGAACAAATACTGCTGGAAGTATCGCGATGACGCAAAGGAAGCCAATGAAATAGCGTCAAGTCGAGATCTAGAGAGACTGCAACATTTTTGTGTTAATCAGGTGGAGCGCATGATGGAACTGTGGAACACTAATGCTGAGTTCAGGGAAGAATATATTATGAGCAACATGAGGAGTACCCTGAGGCGACTAAAGACGTTGGATGGCCGCTCCCTTGGCCCCAATGAAGAGCCGCATATACTGAATCTTATCGTTAAGGAGGAACCAGCTAGGGACAATTCTCTTTCAACGGTTTCAACAACTCAGGAATCTGGAAAACTGATACCCGCTGATGATGCAAGAGATAATGACAAACCAGAAACCAAAGTAGCCGAAACTAAGAATCAAATGACAAAAAGGAAGAAGCCCGAAACAGTTATTGCCTTAGTGAATAACCCTAGAAATATCTATAGCGAGAATGAGGTAGAAGAGCCACCGCGACTGGAGGAGATTAAGCGAACAAGAGAGGAAGAGGAGCTGGCTGCAAAAGCAGAAGAGTTGAGAAAGGAAGACGAAGCTATGAAGTTGAAGGAGCAACGGAAGTTGGAAGAGAAGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAAAAGAAACGCTGAGAAAGCCCAAGCCAGGGCGGTAATCAAAGCACGGAAAGAGGCAGAAGAGAGAGAGAAGCTAAAGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAGATGGCAGCTGAGACGGAAGCTGGAAATGATTGGGATGAAAGGGAATCTGCTCTAGTCACCGAAAACCCTTCAGAAGTTCCAAAGGAGGAGTTTGAAAACACAGGTAAACAGGGGATGGCAGCGAAGAGGCCTCAAAAAGCGTCTCAGTACACAAAGCAGAGCAAGACGAAGTCAATTCCTCTGCCACTTCGAAATCGGGGTAAGAGGAGGATGCAACCATGGATGTGGGTTCTTCTGACAACCGTGGTTGTTTTTGCGCTGTTCTTCGTTGGACAACAACGGCTTCTCTACTAG 4452 42.59 MMADTDVLADTSEVNEKCALDMSTYENLPKGCNAASLHCATPIPKDDTDGSYVFVSSTDAATSDDHVASDLNGQAKCDTEIEVRNRELNTDVGRKPESIFVSDALKDSQFKFSEHVKESEAIQDEIRVADVLQSSEAKVDEAEPGLDSSQTVEETRILEDRTINESFDAETNSGEIHGVLSPQEVEDNQIQEENQRISTSGSSNTDANHCGEIEVESSQMAEDIQIHEDNGLVEIMKSSDTETNHVINIEAESSQKADGIQIHKENGTVAIKFSDTESNPGEEIEVESSQKADDIQNHEENGIMKASSDTVASPRSEIEVESSREVEDIEIQGQNEVVDAIKSSATVETRGQEGEVIPEYNETVAINELSDNIHNSSEQTEMESFGREEGIRESEDANLEAADCHCVNGKEKVDEMVNKAVISDPVGGIGESQIINMGAAKSDLDHSDDSMEDVKRECTSGVALNEENSEKTQFTISPDGEHYQVVGEEQESLKNEVSLLEPSEENKAGVEQHLTAAPSPLVSSEDINGSISISTEDGLPTSMDQDDPLGTIDDKDTVANRTSFHDHTESSSGSVDCDIATVESHKLSPTVLVSDPIVELNDITVNDEQEVNHVLELEENSKMAFHLKVDECVKVEVLEGTVSGNGDEVPTALNESRISCGDDFVAGSQLIAEDIESVESINTAVSAVVIGNTSIEIRELGSTNCPNDPVVRSDLDVEDCKMSEIMASAGDVVQPDKEVSENHEVGFLGNSNFETKCQNGHVEKDHQATFHSNDFTSIECQERVSTVPEVPNGINKSSAIQLSSAVATDSELHDDESSSSPTANEKSGDDIKIPSSIGGGSRNIPGDDCSVSKTEVLKGSIVNDEGNLNSMSDVVSETKPAAEETKVIHEGCQNEPSPISPEGSGDTLTGQNVGAEAGTRPFNFLVKVPRFDDKNIREQIKCAQTEVDWKTKDRDTIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLEIESVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQLREQLSSTMGKQDELQQALDQKDQIEERLKLLRKEMDLLRDNVLKAESVIKAAKKKYNDESIKLDELQSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEANEIASSRDLERLQHFCVNQVERMMELWNTNAEFREEYIMSNMRSTLRRLKTLDGRSLGPNEEPHILNLIVKEEPARDNSLSTVSTTQESGKLIPADDARDNDKPETKVAETKNQMTKRKKPETVIALVNNPRNIYSENEVEEPPRLEEIKRTREEEELAAKAEELRKEDEAMKLKEQRKLEEKAKAKEALERKKRNAEKAQARAVIKARKEAEEREKLKEKRAKKKERKMAAETEAGNDWDERESALVTENPSEVPKEEFENTGKQGMAAKRPQKASQYTKQSKTKSIPLPLRNRGKRRMQPWMWVLLTTVVVFALFFVGQQRLLY 1483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31404230 31411495 + Lsi04G024350.1 Lsi04g02435 662484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 190 209 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 1250 1276 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 1234 1248 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 303 317 - -
Lsi04g02435 1483 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 375 1476 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 520 553 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 805 850 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 1343 1422 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 520 541 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 1234 1276 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 135 174 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 303 324 - -
Lsi04g02435 1483 Coils Coil 1036 1118 - -
Lsi04g02435 1483 Coils Coil 1303 1392 - -
Lsi04g02435 1483 MobiDBLite consensus disorder prediction 1343 1443 - -
Lsi04g02435 1483 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 375 1476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02435 - - - csv:101219495 2207.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02071 Lsi-Chr4:27855433 Lsi04g02435 Lsi-Chr4:31404230 6.99E-39 dispersed
Lsi04g02435 Lsi-Chr4:31404230 Lsi09g01737 Lsi-Chr9:26015244 5.28E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02435 Lsi_Chr04 FPKM 18.09322 20.378262 25.215012 23.85717 22.296967 17.735991 22.369055 32.506817 30.463974 32.341274