Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02436 ATGGACGACCTCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATCTGCCTTCTATCCCCAAGAAGCGTGCCTTATCGTATCAGGTCCCCAACTTCCATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGTGCAAGATTCCTCACCAAACCCTCCAACCACTCCGATACTCTCTCATTCGACCTCAAGAGCAAAGACGTTTTCGCTGCTGCTACTCCCTCCACCTTTAAGAAAAACACGGTCGACGTTCTGAATGACGACGATGACAGCCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCTGTATCCAAACCCCCTAAAAAGGTCCGCCCTGGATCTCCCACCGCTGTCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGGCCAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGGTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCTCTTTTGGAATTTGATGATGGCAAGAGGAGCTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGGACCCCCAAGCATTGGGAATTTGGACATCGTCAGTCTATTGACTGTTCTAGCTAGGGCTCAAGGAAAAAACGAAGACCAAAGCGTGAAGAGCTTGTTGTCAGCAAATATTGGTCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTTTGCAGCACCAAAACAAATTAAATGGAAATTCATCTTCTCTTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCACATCAGCTCCAGATACTCTTGCAATGCTGTCGCAGAAGAGCAGTGTCAGCAGTGATAGTGAAAAAACAAGGTCATCGTGCCCATCTGGTTCTGATCTCCAGAATAGGCCTCTGGAACTTACTTCAGCTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCGGATGGACAGGTTCAAGGAACTCAAGTTGGTTTGCCACTTCAGTTGTTTAGCTCTTCGCCTGAACATGATGCCCCACTGAACTTGGCGGCTTCTAGAAAGTACTTCTCTTCTGATAGCAGTAATCCTGTTGAAGAGAGGTCTCCGTCATCTTCTCCTCCTCTCCTACAAAAGTTGTTCCCCGTGCAAAGCACAGAAGAAACTTTCAGTAATGGGAAAATACCAATCAGAAAAGAAGTTAGTGGCATTGAGGTACGAAAGCCTACTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTTGGATGGGGCCAGACCAAATTCGTATCGAACTGTTCCGTATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTTATGCTCAGGATTGGATGGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAATCAGTTTCCAGGGACATTGCGGACACAGATATACAATTGGCTGTCTAATTGTCCGTCTGAAATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCAGTTTATATGTCTATGCGATCCATTGCATGGGAACAGTGTAAAGTTGAAACCATAGGTTGTGGGTTTATTGTCATTCTCGTGTTAAGTTCTGTCTTCCTTGATCGGGTTTCCAGGGAGGATTCGTCTGATCAAATCCTCGAAAGCATGGAGATCCATTGCACATCTATGGGAGGCTACATATCCGAAGAAGTAATGGGATTAAGTAGGCAGGGGATATACAACGAGATACAGTCTAGAAGTTTCAAAGTTGGGGATGTATCACCTACAACCCTTGGTCGTTGTTTCATTGAGGTAGATGTGGAATTGAGGCATCTTGAGTCCCATTTTGATGAGTTTAAAGTACCTGATATCAGTTCAGAAAATCATTCGTGTGTTCCTTCGCAGCCAAGGCTAAGAGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGCCCTCTTACGAGCTAGATAATCCAAATTTTTTAATAAGGCGGTTCAGATTTTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACACTGCTTGACATTTTGGCAAGAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGATTCAGCTCTTAAGCCGATCAGTGAAAAGGAGGTGCAGACGGATGGTTGACTTACTTGTTCATTATCACTTATCTGACTTTGGTGATGCAAAGAAAAAGTACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCCTCAATGACAGATGCAGATGATTTGGTTGATGCACTAACAAATGACCCGCTAGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGAAAATGGACAGTCGCCACAAGCTAATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGAATTGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGTGTGCAAGGTAGGTCCTGCTCCAGGTGTGTTGTTGCTCCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGGACACAGAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCCGTGTGCGTTTATGTGTGCCTATTTTTACGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGCTATGGGACAATTTAG 2988 45.52 MDDLGAQVVPPIFIHQTLTSRYTDLPSIPKKRALSYQVPNFHHQGQLHPHTWNPKAWDWDSARFLTKPSNHSDTLSFDLKSKDVFAAATPSTFKKNTVDVLNDDDDSLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPTAVTYPMCQVDNCKEDLANAKDYHRRHKVCEVHSKSSKALVAKQMQRFCQQCSRFHPLLEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSIGNLDIVSLLTVLARAQGKNEDQSVKSLLSANIGQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNSSSLSTMDLLTVLSATLATSAPDTLAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELTSAGGERSSTSYQSPMEDSDGQVQGTQVGLPLQLFSSSPEHDAPLNLAASRKYFSSDSSNPVEERSPSSSPPLLQKLFPVQSTEETFSNGKIPIRKEVSGIEVRKPTSSNIPFELFRELDGARPNSYRTVPYQAGYTSSGSDHSPSSLNSYAQDWMGRISFKLFDKDPNQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMRSIAWEQCKVETIGCGFIVILVLSSVFLDRVSREDSSDQILESMEIHCTSMGGYISEEVMGLSRQGIYNEIQSRSFKVGDVSPTTLGRCFIEVDVELRHLESHFDEFKVPDISSENHSCVPSQPRLRDEILQFLNELGWLFQRERPSYELDNPNFLIRRFRFLLTFSAERDFCALVKTLLDILARKCLITDGLSMKSLEMISEIQLLSRSVKRRCRRMVDLLVHYHLSDFGDAKKKYLFPPNFIGPGGITPLHLAASMTDADDLVDALTNDPLEIGLECWSSQLDENGQSPQANALMRGNHSCNELVERKLGDRKNGQVSVRIGNEIEQLEVSSGERGSVQGRSCSRCVVAPKCNRRVPGSGTQRLLHRPYIHSMLAIAAVCVYVCLFLRGSPDIGLVAPFKWENLGYGTI 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31413790 31419326 + Lsi04G024360.1 Lsi04g02436 662485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02436 995 MobiDBLite consensus disorder prediction 302 321 - -
Lsi04g02436 995 SUPERFAMILY SBT domain 143 223 IPR036893 GO:0003677|GO:0005634
Lsi04g02436 995 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 39 592 - -
Lsi04g02436 995 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 628 995 - -
Lsi04g02436 995 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 628 995 IPR044817 GO:0003677
Lsi04g02436 995 MobiDBLite consensus disorder prediction 212 237 - -
Lsi04g02436 995 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677
Lsi04g02436 995 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 592 IPR044817 GO:0003677
Lsi04g02436 995 Gene3D - 137 206 IPR036893 GO:0003677|GO:0005634
Lsi04g02436 995 MobiDBLite consensus disorder prediction 348 401 - -
Lsi04g02436 995 Pfam SBP domain 145 218 IPR004333 GO:0003677
Lsi04g02436 995 MobiDBLite consensus disorder prediction 432 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02436 - - - cmax:111474399 1543.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01148 Lsi-Chr3:21778041 Lsi04g02436 Lsi-Chr4:31413790 2.04E-15 dispersed
Lsi03g01153 Lsi-Chr3:21830486 Lsi04g02436 Lsi-Chr4:31413790 2.99E-15 dispersed
Lsi04g02436 Lsi-Chr4:31413790 Lsi06g01398 Lsi-Chr6:24549992 2.99E-32 dispersed
Lsi04g02436 Lsi-Chr4:31413790 Lsi09g01730 Lsi-Chr9:25940387 4.34E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25269 PF03110 SBP 2.40E-28 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02436 Lsi_Chr04 FPKM 3.654589 4.762973 4.622292 4.239007 4.284144 3.221846 5.541229 6.825137 7.682689 8.534862