Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02439 ATGGGCGCCTGTTTGTCTAACTGCCTCGTTATTCCCAAAGCCTGTTCTGTCCGTCCACCTCCTCCCACCGCCAAAGTGATCTCTTTACAAGGCCATCTCCGCGAATACCCTGTTCCCATCTCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCCTTTCTCTGCAACTCCGACCGCTTATACTACGATGATTTCATTCCGCCTTTGCTTCTTGACGACCACCTGCAGGCCAATCAGATCTATTTCCTTCTTCCTTCCTCCAAGCTCCACCAGCGATTGACCGCCTCCGACATGGCCGCCTTGGCCGTCAAAGCCACATTCGCCCTCCAGAATGCCCCCCTCCGTCGTAACAAGGGTCGTATTTCTCCCCTCCCTCATGATCTCCTTAGCCCCAAGGACGAACACGCCCCCTCCATTGACTCCAAGAAGAACACCGCCGGCCCTACTACCTCCTCCTCCTCCGTTAGAAAATTGCAGAGATTGACATCTAGAAGGGCAAAACTGGCGGAAGAGGTTGCGGTAGAAAAAGAACGCGAAAGAGAATCGGAGACCCCTTGTATAACAGCAAGACAATTGCAAGAAGCAGTTGATGCTTATCCGAATGACCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGGAAGCCACGATAAGGCGGCTGCCGCCGATCATTTTCTGAAATCAGCGAAACTAGACCCTGGGAATGCTGCCGCTTTCAAATACCTAGGGCATTATTACGCCACATTTTCGGTCGATATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTCGACGTCGACGATTTCCACTCTGGAGAAGCCTTGTGCAATCTGTTGCATCACGAAGGAAAGGAGAGTTTAGAGGTTGCTGTATGCAAAGAGGCTTCCTCTAAGTCACCCAGGGCCTTCTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTATCAAAAGAAATGGACTGAAGCTGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCTTGGGTCTTGCATATCAGCGACTTGGCAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTCGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTTGGCAAAGGAATACATTAATAAGGGGGCGTTTAAATGGGCATCCTTCCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGGAAACTTGTCGTGTATTTGGAAGTTGCTTGGAGATATTCAGCAAGCTCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCATCTTTGAATGATGATTCTGGATTTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACATTAGGGGCCTTGATGCTCGAGGGTGATAATCATGAATTTTGGGTGGCAGTGGGATGCATCTCTAACCATGATGCATTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTCTAGCTGGAGCCTGGGCTTATCTTGGGAAGCTATACTGGAATAGGGGCGAGAAGCAATTGGCGAGACAGGCTTTTGATTATGCCAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACATTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCGAAGCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTGTTTGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTAAATGGACTAGCTTTTGAGGCACAATTAGATTATCGATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCATTTTTCAGATGGAGTTCCAAGGTCTCATGTAGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTAGAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCTTTCTCTCTATGGAAACTAGGAAAGAATGACCAGGCCCTTAGCACTGTGAGAACACTTGCTTCTGGCATCTCTACCATGGAAAGCACACGTACTGCTGCATCTGTTGGTTTCATATGCAGACTGTTGTGTTCAATATCTGGATTGGATTCCGCAATTAACAGTGTCATGAAGATGCCAACCAATTTTTTCCAGAGTTCAAAAGTGACCTTTGTAGTGGCTGCTGTTCATGCCCTTGATCATTGTGATCGGCTTGAGTCCATTGTTTTAAGCAGCCGTTCCTGCCTCCAGTCTTATGAAGAGATTACTAGAATGCACATTTTGATTGCTCTTTCTAAGCTGATCAAATATCGAAGAAATAACTGCCTGGGATTCCTCAATGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCGAACAGTAGTTTGATCAGTCCATGCCCCTCTGGATTCTTCTCTAAACGGCATGTTTCAAACAGGAACTTGCTTGGTTACCTTTTGCTATCCAACGAAGAAAGGGATGACAATCACACGGCTACTAGGTGCTGCAACATGTTTTATGCTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGATGCTTACGTCAAGAGCCATGGAAATATGATGCTCGATATCTCCTTATACTAAACATTGTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTATGTGTAATTATTGAGCGGCTAATCCTTGTTGCCTTCTCCAATGAAGAACCATATTTTAAGAAAGATACATCTCATCAATATAAAAAGTTTCAGCTTCTACTTTGTGCGTCTGAGATCAGTTTGCAAGGCGGTGGCCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCTGAAATATATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAACGATTCTAACAACCTCCGTAAAGAGTTCCTAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGTCTTAAATTCATTGCATCTGGATATGAGCTTTATGATGAATCCAATATCTTAGAACTTAGTTTCAAGAAATGCTCAGTAGAGAGCAAGAATCTGCAACACATGGTAATACCCATGTTTAGTCTGGTCGATGGTTTGATATCTTTTAGGAGCCAGGATTTCATGACTGCTGAGAAGTATTTTGCACAAGCTTGTTCTTTGGGACATGATGACGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTTCTCATTTCTTGAGGCTGGCTGTGAACAGTCTCCTTAAAGCTCAAGTAATTTCTGTTGTTCCAATACCAATTGTCTCGATCACACTGGCACAAGCAGAAGGGAGTCTTGGTTTGAAAGAAAATTGGGAGTCAGACCTTCGTTTTGAATGGTTCTCGTGGCCACCAGGTATGAGGTCTGCGGAAATCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCAAAAGTTGGTTCTGATCAATTGAGGGATGAGTTATGTCAGTCTCCTCTGAGATGGGTCCTTCGCGCAATTCATGTAAACCCTTCTTGTATGAGGTATTGGAAGGTGCTGCAAAGCTTGTGGAGTGACGGCTGA 3897 44.65 MGACLSNCLVIPKACSVRPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLYYDDFIPPLLLDDHLQANQIYFLLPSSKLHQRLTASDMAALAVKATFALQNAPLRRNKGRISPLPHDLLSPKDEHAPSIDSKKNTAGPTTSSSSVRKLQRLTSRRAKLAEEVAVEKERERESETPCITARQLQEAVDAYPNDPSSHFKLGIFMWENGGSHDKAAAADHFLKSAKLDPGNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCNLLHHEGKESLEVAVCKEASSKSPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLFKKGVEHFQQALEISPKSITAQFGLSSGLLGLAKEYINKGAFKWASFLLEEASKVARGSTHLAGNLSCIWKLLGDIQQALHLAPWEANIYTDIAITLDIISSLNDDSGFGFNSWQISEKMTLGALMLEGDNHEFWVAVGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDYARSIDPSLALPWAGMSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYRSAVAAYRLAHLTISHFSDGVPRSHVGNFFEALQECENLSREGMLDIEGLQVYAFSLWKLGKNDQALSTVRTLASGISTMESTRTAASVGFICRLLCSISGLDSAINSVMKMPTNFFQSSKVTFVVAAVHALDHCDRLESIVLSSRSCLQSYEEITRMHILIALSKLIKYRRNNCLGFLNGVMHLRKALHAYPNSSLISPCPSGFFSKRHVSNRNLLGYLLLSNEERDDNHTATRCCNMFYAFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRCLRQEPWKYDARYLLILNIVQKAREERFPCHLCVIIERLILVAFSNEEPYFKKDTSHQYKKFQLLLCASEISLQGGGQIKCINYAKAASSISLPEIYLFYAHLLLCRAYAAENDSNNLRKEFLKCLDLKTDNYLGWVCLKFIASGYELYDESNILELSFKKCSVESKNLQHMVIPMFSLVDGLISFRSQDFMTAEKYFAQACSLGHDDGCLLLCHGVTCMELAKQLCSSHFLRLAVNSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWESDLRFEWFSWPPGMRSAEILFQMHLLAKQSKVGSDQLRDELCQSPLRWVLRAIHVNPSCMRYWKVLQSLWSDG 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31446365 31472402 + Lsi04G024390.1 Lsi04g02439 662488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02439 1298 ProSiteProfiles TPR repeat profile. 383 416 IPR019734 GO:0005515
Lsi04g02439 1298 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 189 982 - -
Lsi04g02439 1298 SUPERFAMILY TPR-like 197 419 IPR011990 GO:0005515
Lsi04g02439 1298 PANTHER SUPERKILLER 3 PROTEIN-RELATED 189 982 IPR039226 GO:0006401|GO:0055087
Lsi04g02439 1298 Gene3D Tetratricopeptide repeat domain 193 290 IPR011990 GO:0005515
Lsi04g02439 1298 ProSiteProfiles TPR repeat region circular profile. 349 379 - -
Lsi04g02439 1298 SMART tpr_5 246 280 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 424 457 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 665 698 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 315 348 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 561 594 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 383 416 IPR019734 GO:0005515
Lsi04g02439 1298 SMART tpr_5 349 382 IPR019734 GO:0005515
Lsi04g02439 1298 MobiDBLite consensus disorder prediction 148 165 - -
Lsi04g02439 1298 MobiDBLite consensus disorder prediction 124 168 - -
Lsi04g02439 1298 Coils Coil 164 184 - -
Lsi04g02439 1298 Gene3D Tetratricopeptide repeat domain 516 756 IPR011990 GO:0005515
Lsi04g02439 1298 SUPERFAMILY TPR-like 427 691 IPR011990 GO:0005515
Lsi04g02439 1298 ProSiteProfiles TPR repeat profile. 349 382 IPR019734 GO:0005515
Lsi04g02439 1298 Gene3D Tetratricopeptide repeat domain 291 487 IPR011990 GO:0005515
Lsi04g02439 1298 ProSiteProfiles Rhodanese domain profile. 273 340 IPR001763 -
Lsi04g02439 1298 Pfam PADRE domain 1 173 IPR025322 -
Lsi04g02439 1298 Pfam Tetratricopeptide repeat 321 376 - -
Lsi04g02439 1298 ProSiteProfiles TPR repeat profile. 561 594 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02439 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 1953.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02439 Lsi-Chr4:31446365 Lsi10g00580 Lsi-Chr10:8418467 3.23E-13 dispersed
Lsi04g02439 Lsi-Chr4:31446365 Lsi01g01039 Lsi-Chr1:8573944 1.22E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02439 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0