Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02440 ATGGAGGCTGAAAAGAAATCATCGGCGGTATCGGATGTTGGGGCGTGGGCGATGAATATCGTCAGCTCAGTCGGGATAATCATGGCCAACAAGCAGCTCATGTCTGCCAATGGCTATGCTTTCAGTTTCGCCACAACTTTGACTGGGTTCCACTTTGCGGTGACTGCACTGGTTGGTCTGGTCTCAAATGCCACTGGTTATTCCTCATCAAAGCACGTTCCTTTGTGGGAGCTCTTTTGGTTTTCTATTGTCGCAAATATGTCTATCACGGGAATGAACTTTAGTCTTATGTTGAACTCAGTGGGATTCTACCAAATCTCAAAACTCAGTATGATCCCTGTGGTTTGTGTGATGGAGTGGATCCTTCATAACAAGCACTACTCTAAAGAAGTTAAAATTGCTGTTGTAGTAGTAGTAATTGGTGTGGGAGTTTGCACTGTCACTGATGTAAAAGTTAATCTCAAAGGGTTTTTATGTGCGTGCATAGCTGTTTTGTCAACATCTTTGCAGCAAATTGGACTGAACTTTGGTGTTCTGTCTGATCATCTTACGGTCAGGCTAGGTAGAGGCCAGCAGAAAGCTTTACTTTCTTCCCTACAGCCTTTGCACACTATAGGTTCACTACAAAAGAAGTACTCCATTGGATCTTTTGAATTGCTGAGCAAGACAGCACCTATTCAAGCCCTCTCTCTCCTGGTTCTCGGTCCGTTTATTGATTACTACCTTAGCGACACATCTCTACTGAACTATAAAATGTCTTCTGGTGCTATTTTGTTCATCCTCCTTTCATGCGCTCTTGCTGTGTTCTGCAATGTCAGTCAATACTTGTGCATTGGGCGTTTCTCAGCTGTCTCCTTCCAGGTGTTAGGTCACATGAAAACAGTATGTGTTCTCACATTGGGATGGCTGCTCTTTGATTCAGAACTGACTTTGAAGAACATATCAGGCATGATTTTAGCAGTTGTTGGTATGGTTATTTATAGTTGGGCTGTGGAGGTTGAGAAGCAATCTAGTATGAAGACTAATATCAATGTGAAAAATAGCCTGACGGAAGAGGAAATTAGACTTCTGAAGGAAGGAATGGAGTCTAATCCTGTCAAGGATATTGAACTTGGTGAGACTAAAGGATAA 1131 42.62 MEAEKKSSAVSDVGAWAMNIVSSVGIIMANKQLMSANGYAFSFATTLTGFHFAVTALVGLVSNATGYSSSKHVPLWELFWFSIVANMSITGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKIAVVVVVIGVGVCTVTDVKVNLKGFLCACIAVLSTSLQQIGLNFGVLSDHLTVRLGRGQQKALLSSLQPLHTIGSLQKKYSIGSFELLSKTAPIQALSLLVLGPFIDYYLSDTSLLNYKMSSGAILFILLSCALAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTLKNISGMILAVVGMVIYSWAVEVEKQSSMKTNINVKNSLTEEEIRLLKEGMESNPVKDIELGETKG 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31477451 31480938 - Lsi04G024400.1 Lsi04g02440 662489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02440 376 PANTHER UDP-GALACTOSE TRANSPORTER 2-LIKE 5 174 - -
Lsi04g02440 376 PANTHER SOLUTE CARRIER FAMILY 35 5 174 - -
Lsi04g02440 376 PANTHER SOLUTE CARRIER FAMILY 35 196 353 - -
Lsi04g02440 376 PANTHER UDP-GALACTOSE TRANSPORTER 2-LIKE 196 353 - -
Lsi04g02440 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 329 - -
Lsi04g02440 376 Pfam Triose-phosphate Transporter family 23 172 IPR004853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02440 - - - csv:101223222 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02440 Lsi-Chr4:31477451 Lsi10g00023 Lsi-Chr10:403291 0 dispersed
Lsi04g02440 Lsi-Chr4:31477451 Lsi07g01365 Lsi-Chr7:19852343 2.47E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g5 . . . . . . . . . . Cma01g02055 . Car01g01619 . . . . . . . . . . . . . . . . . . . . . Cone20ag0001 Lsi04g02440 Csa04g02756 . . . . . . . . . . Sed05g3034 Cmo01g02111 . . . . . . . Bhi09g02776 Tan01g5196 Cmetu07g1779 . . Mch11g0004 . Cla11g01867 Cam11g1937 Cec11g1963 Cco11g1977 Clacu11g2102 Cmu11g1904 Cre11g2311 . . Chy07g00443 Cme07g00006
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001783 1 3 2 2 2 1 4 1 1 2 2 2 4 2 2 4 1 4 2 1 2 2 2 2 2 2 2 4 3 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02440 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0