Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00005 | ATGGCGCTAGCGGTTAAGGCTTTTCCGTTCACTGTGGTGAGTCACGTGCTGGCAATCGTGGCGCTCATTCTTGTGCTGGTTTGGACCATTCATTTCAGAGGCGGCCTCGCTTGGGAGGCTGTCAATAAGAATCTCATCTTCAACATTCATCCTGTTCTTATGCTACTGGGATTGATAATTATAGGAGGTGAAGCAATAATTAGTTATAAATCACTGCCATTAAGGAAAGAAGTGAAGAAAGTGATTCATTTGGTGCTACACGGCGTCGCATTGGCACTGGGTATTGTGGGGATCATCGCCGCTTTCAAGAACCATAATGAGAGTGGGATCGCTAATCTTTACAGCTTGCATTCTTGGATTGGAATTGGCGTTATTAGCCTTTATGGTCTCCAGTGGGTGTACGGCTTCGTAACATTCTTCTACCCAGGAGGATCCGCTGATCTCCGACGGGCGTCACTCCCATGGCACGTGATATTTGGTATTACTGTATACACATTGGCCGTCGGCAACTCGGCCCTGGGTTTCCTTGAGAAGCTCACATTTCTTGAGAGCTCCGGCCTCGCTAAATACGGCACCGAGGCCTTTCTCGTCAACTTCACCGCCATCACCACCGTCATTTTTGCAGTGTTTGTCATTTTATCTGTTATTTCTCAGCCTTGCGCTCAAGAAGACGGCCATGGCGATTATTCTGCCATATGA | 699 | 47.78 | MALAVKAFPFTVVSHVLAIVALILVLVWTIHFRGGLAWEAVNKNLIFNIHPVLMLLGLIIIGGEAIISYKSLPLRKEVKKVIHLVLHGVALALGIVGIIAAFKNHNESGIANLYSLHSWIGIGVISLYGLQWVYGFVTFFYPGGSADLRRASLPWHVIFGITVYTLAVGNSALGFLEKLTFLESSGLAKYGTEAFLVNFTAITTVIFAVFVILSVISQPCAQEDGHGDYSAI | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 72543 | 79841 | - | Lsi05G000050.1 | Lsi05g00005 | 662497 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00005 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
Lsi05g00005 | 232 | CDD | Cyt_b561_ACYB-1_like | 42 | 183 | - | - | |
Lsi05g00005 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 216 | IPR006593 | - | |
Lsi05g00005 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
Lsi05g00005 | 232 | Gene3D | - | 2 | 225 | - | - | |
Lsi05g00005 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 232 | IPR043205 | GO:0016491 | |
Lsi05g00005 | 232 | PANTHER | TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 | 1 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00225 | Lsi-Chr3:2843153 | Lsi05g00005 | Lsi-Chr5:72543 | 6.11E-70 | dispersed | |
Lsi04g01170 | Lsi-Chr4:17040809 | Lsi05g00005 | Lsi-Chr5:72543 | 1.90E-55 | dispersed | |
Lsi05g00005 | Lsi-Chr5:72543 | Lsi09g00711 | Lsi-Chr9:8102080 | 7.41E-59 | dispersed | |
Lsi05g00005 | Lsi-Chr5:72543 | Lsi04g00298 | Lsi-Chr4:2998833 | 5.95E-39 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00005 | K08360 | - | csv:101209308 | 389.808 |