Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00005 ATGGCGCTAGCGGTTAAGGCTTTTCCGTTCACTGTGGTGAGTCACGTGCTGGCAATCGTGGCGCTCATTCTTGTGCTGGTTTGGACCATTCATTTCAGAGGCGGCCTCGCTTGGGAGGCTGTCAATAAGAATCTCATCTTCAACATTCATCCTGTTCTTATGCTACTGGGATTGATAATTATAGGAGGTGAAGCAATAATTAGTTATAAATCACTGCCATTAAGGAAAGAAGTGAAGAAAGTGATTCATTTGGTGCTACACGGCGTCGCATTGGCACTGGGTATTGTGGGGATCATCGCCGCTTTCAAGAACCATAATGAGAGTGGGATCGCTAATCTTTACAGCTTGCATTCTTGGATTGGAATTGGCGTTATTAGCCTTTATGGTCTCCAGTGGGTGTACGGCTTCGTAACATTCTTCTACCCAGGAGGATCCGCTGATCTCCGACGGGCGTCACTCCCATGGCACGTGATATTTGGTATTACTGTATACACATTGGCCGTCGGCAACTCGGCCCTGGGTTTCCTTGAGAAGCTCACATTTCTTGAGAGCTCCGGCCTCGCTAAATACGGCACCGAGGCCTTTCTCGTCAACTTCACCGCCATCACCACCGTCATTTTTGCAGTGTTTGTCATTTTATCTGTTATTTCTCAGCCTTGCGCTCAAGAAGACGGCCATGGCGATTATTCTGCCATATGA 699 47.78 MALAVKAFPFTVVSHVLAIVALILVLVWTIHFRGGLAWEAVNKNLIFNIHPVLMLLGLIIIGGEAIISYKSLPLRKEVKKVIHLVLHGVALALGIVGIIAAFKNHNESGIANLYSLHSWIGIGVISLYGLQWVYGFVTFFYPGGSADLRRASLPWHVIFGITVYTLAVGNSALGFLEKLTFLESSGLAKYGTEAFLVNFTAITTVIFAVFVILSVISQPCAQEDGHGDYSAI 232
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 72543 79841 - Lsi05G000050.1 Lsi05g00005 662497
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00005 232 Pfam Eukaryotic cytochrome b561 49 181 IPR006593 -
Lsi05g00005 232 CDD Cyt_b561_ACYB-1_like 42 183 - -
Lsi05g00005 232 ProSiteProfiles Cytochrome b561 domain profile. 13 216 IPR006593 -
Lsi05g00005 232 SMART 561_7 49 175 IPR006593 -
Lsi05g00005 232 Gene3D - 2 225 - -
Lsi05g00005 232 PANTHER CYTOCHROME B561-RELATED 1 232 IPR043205 GO:0016491
Lsi05g00005 232 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 1 232 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00225 Lsi-Chr3:2843153 Lsi05g00005 Lsi-Chr5:72543 6.11E-70 dispersed
Lsi04g01170 Lsi-Chr4:17040809 Lsi05g00005 Lsi-Chr5:72543 1.90E-55 dispersed
Lsi05g00005 Lsi-Chr5:72543 Lsi09g00711 Lsi-Chr9:8102080 7.41E-59 dispersed
Lsi05g00005 Lsi-Chr5:72543 Lsi04g00298 Lsi-Chr4:2998833 5.95E-39 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00005 K08360 - csv:101209308 389.808