Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00025 ATGAATGAACCTGGGGCTTGTGGATTTGGTGAATTTGGAAGGACTGTGAATGATGGCAATGTTGCTGCAGTTTCCTATCTCTATAGGAATGGTTCTGGTTGTGGTGCATGCTACCAGGTTAGGTGCACCAATCCAAAATATTGTAGTGGTAGTGGAGCCTTTGTAGTGGTGACAGACCATGGTGAAGGAGATTACACTGACTTTATATTGAGTCCAAGAGCTTATGCAAAACTGGGTCATCCAAATACAGCCTTAGAATTATTCTCACATGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCTAATTATAATACTCTCAAATTCAAAGTTCATGACAATAGTAGATACCCTGATTATTTGGCTATTCTTATCATTTATGTTGCTGGCAAAAATGATATCACTGCTGTTGAATTGTGGCAGGAGGATTGCAATGAATGGAAGGGGATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAACCCTCCTAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAGGTGGGTGGTGGCAAACAATGCTCTCCCAACTTATTGGAAGGCAGGAATTGCTTATGACACTGACATTAACCTCTATTAA 633 41.07 MNEPGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPKYCSGSGAFVVVTDHGEGDYTDFILSPRAYAKLGHPNTALELFSHGVVDVEFRRVSCQYPNYNTLKFKVHDNSRYPDYLAILIIYVAGKNDITAVELWQEDCNEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSMGYGRWVVANNALPTYWKAGIAYDTDINLY 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 392278 396668 - Lsi05G000250.1 Lsi05g00025 662517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00025 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 122 205 IPR007117 -
Lsi05g00025 210 PANTHER EXPANSIN-B3 4 209 - -
Lsi05g00025 210 SUPERFAMILY PHL pollen allergen 109 204 IPR036749 -
Lsi05g00025 210 PANTHER EXPANSIN-LIKE B1 4 209 - -
Lsi05g00025 210 Pfam Expansin C-terminal domain 111 194 IPR007117 -
Lsi05g00025 210 PRINTS Major pollen allergen Lol pI signature 42 52 IPR005795 GO:0005576|GO:0019953
Lsi05g00025 210 PRINTS Major pollen allergen Lol pI signature 181 198 IPR005795 GO:0005576|GO:0019953
Lsi05g00025 210 PRINTS Major pollen allergen Lol pI signature 129 144 IPR005795 GO:0005576|GO:0019953
Lsi05g00025 210 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Lsi05g00025 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 4 107 IPR007112 -
Lsi05g00025 210 SUPERFAMILY Barwin-like endoglucanases 4 106 IPR036908 -
Lsi05g00025 210 Gene3D - 1 102 IPR036908 -
Lsi05g00025 210 Gene3D - 103 206 IPR036749 -
Lsi05g00025 210 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Lsi05g00025 210 PRINTS Expansin/Lol pI family signature 150 164 IPR007118 GO:0005576
Lsi05g00025 210 PRINTS Expansin/Lol pI family signature 3 21 IPR007118 GO:0005576
Lsi05g00025 210 PRINTS Expansin/Lol pI family signature 90 106 IPR007118 GO:0005576
Lsi05g00025 210 Pfam Lytic transglycolase 24 96 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00025 Lsi-Chr5:392278 Lsi11g01255 Lsi-Chr11:21176525 9.83E-55 dispersed
Lsi05g00025 Lsi-Chr5:392278 Lsi10g00889 Lsi-Chr10:13169875 1.40E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00025 - - csv:101215548 411.764