Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00055 ATGGAGATTTTGAAGATATTGTTGATTGTAATATTTGGTGTGGTTTTGCATGGAATTGAAAGTTTAGGAGATGGACTGTTGGTTTTTGACTATTACAAAGAAACATGCCCTTTTGTCGAAGATATTATTCGACGACAAGTGGAAATTGCCGTGCTCAAAGATCCTCGAATGGCTGCTTCACTCCTTCGCTTGCATTTTCATGATTGTTTTGTTATGGGATGTGATGCATCAGTTCTTCTAGACACTAATGACGAGATGGTGAGCGAAAAGCAAGCAGCTCCAAATTTAAACTCTCTTCGCGGTTTCAATGTTATCGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACACTGTGTCTTGTGCTGATATTTTGACCATTGCTGCTCGTGATTCTGTTGTGCTCAGAGGAGGACCTGGATGGGCAGTGTTGTTGGGAAGGAAAGACTCCTTGAAAGCAAGCTTTGATGGTGCCAACAAATACATTCCTTCTCCCAATTCTTCCCTTGAAACCCTAATTGCCAATTTTGAAGAACAAGGTCTTAATGTTGCAGACTTGGTTGCTCTATCAGGTCAGTCAATAAAACAAAACTAA 597 39.87 MEILKILLIVIFGVVLHGIESLGDGLLVFDYYKETCPFVEDIIRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDTNDEMVSEKQAAPNLNSLRGFNVIDEIKYILEEACPYTVSCADILTIAARDSVVLRGGPGWAVLLGRKDSLKASFDGANKYIPSPNSSLETLIANFEEQGLNVADLVALSGQSIKQN 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1137953 1139478 + Lsi05G000550.1 Lsi05g00055 662547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00055 198 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Haem peroxidase superfamily signature 186 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 ProSiteProfiles Plant heme peroxidase family profile. 26 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 Gene3D Peroxidase, domain 2 164 193 - -
Lsi05g00055 198 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Lsi05g00055 198 Gene3D - 30 163 - -
Lsi05g00055 198 PANTHER PEROXIDASE 72-RELATED 5 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 Pfam Peroxidase 44 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g00055 198 PANTHER PEROXIDASE 20 5 193 - -
Lsi05g00055 198 SUPERFAMILY Heme-dependent peroxidases 28 192 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00055 Lsi-Chr5:1137953 Lsi09g01505 Lsi-Chr9:23101471 7.87E-64 dispersed
Lsi05g00055 Lsi-Chr5:1137953 Lsi01g00641 Lsi-Chr1:5166953 6.91E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00055 K00430 - csv:101207771 338.191