Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00071 ATGGCCATCGCCGTGCTCGATGCCCTCGACAACGCTCGTACACAATGGTACCATATTACGGCCATAGTCATAGCCGGGATGGGCTTCTTCACAGATGCCTATGATCTATTTTGCATCTCGACCGTGTCGAAGCTTCTTGGTCGACTTTATTACTTTGATCCAGATAGTACTAAGCCTGGAAAACTTCCAAACCCGGTCAACAACGCTGTTGTCGGAGTTGCGCTAGTCGGAACCCTAATGGGGCAGCTTTTCTTTGGGTGGTTGGGTGACAAACTTGGAAGGAAGAAAGTTTATGGTGTTACCCTTATTCTTATGGCATTTTGTGCCATTTGCTCAGGGCTTTCTTTTGGGTCAACATCAAAATCAGTGATAGGGTTAGTATCAATGATCCTATCAAAAGTGTTCGTATCCCTTCATGATGCTCCCTCTTACAAAAGCAACCCTGTATTTTCAACACAACCTCAAGGAGATTTCCTATGGAGAATTGTTCTAATGCTGGGTGCTTTACCAGCCATTTTAACATACTATTGGAGAATGAAAATGCCTGAAACAGGACGTTACACTGCCCTTATTGAAGGCAATGCCAAGCAAGCTGCTGCAGACATGGGAAAAGTTTTAGAGATCTCAATTCAAGCTGAACAAGACAAACTTTCCAATTTCAAATCAGCCAATGAATATGGTTTATTGTCTAAAGAATTCTTCAATCGCCATGGACTTCATTTGATTGGAACTACCACTACTTGGTTCTTATTGGACATTGCATTTTATAGCAATAACCTTACTCAAAAAGACATATTCCCAGCTATGAATTTGACTAAGAAACCTGAACAAGTTAATGCATTGGAAGAAGTTTATGAAACTTCTAAAGCTATGTTTCTTGTTGCCTTACTTGGAACTTTCCCTGGATATTGGTTCACTGTTTTCCTCATTGAGAAGCTTGGAAGGTTCAAAATCCAATTGATTGGATTCTTCATGATGTCGGTTTTCATGGCCGTCCTCGGCGTTCGTTATAATTATTTGAAGAATCATCCCGCCGAGTTCGCTGTGCTTTATGGCTTGACATTCTTCTTTGCCAACTTTGGTCCCAATAGCACCACCTTCGTCCTCCCCGCCGAGCTCTTCCCGACTAGGGTTCGATCGACATGTCATGCGCTAAGTGCCGCATCAGGGAAGGCCGGTGCGATCGTTGGAGCTTTCGGGGTGCAAAACTATACACTAGATGGAAACCCTAGCAAGATTCAAAAGGCTATGATTTTCTTGGCCTTCACTAACATGCTAGGGTTTGTGTTTACATTCTTGGTGACGGAGACTAAAGGGCGGTCGTTGGAGGAGATCTCCGGCGAGGACGGGCGCGCGGGCGATAATGACGGTCAAATGCCAGTGAGAGCAATGGGAAAGCCAGGAGACAGGAATTCTCAGTCGGCAATTGGTCACTTCAAGTTGGTTTCGATCGTCTGCAAATCATGGGGACATCACACGTTTTCATGTGATTTTGTGGCGAATTTGGTGTGCAAGATTTTGTCCAATGTTAAGATCTCTCTCCGTTTTTGTCTCGGAGTTATTAGATATAGTGGAGGGGCTCAGGTTGTTCATCGTGGATCCTTTGCATGCATTGGTGGTAGAGACAAACTTTTCTTAGCAATCTGGATCTTGAATCATAAAGAGGGCTCACCTTACAAGGTGGTTTCAATTTATCAGAGGTGTAGAGATTGGCAGTTGGATAACGACCAGTGTCTTATCACTATATTTGACGGGAGCAGAATTTGA 1767 43.86 MAIAVLDALDNARTQWYHITAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYFDPDSTKPGKLPNPVNNAVVGVALVGTLMGQLFFGWLGDKLGRKKVYGVTLILMAFCAICSGLSFGSTSKSVIGLVSMILSKVFVSLHDAPSYKSNPVFSTQPQGDFLWRIVLMLGALPAILTYYWRMKMPETGRYTALIEGNAKQAAADMGKVLEISIQAEQDKLSNFKSANEYGLLSKEFFNRHGLHLIGTTTTWFLLDIAFYSNNLTQKDIFPAMNLTKKPEQVNALEEVYETSKAMFLVALLGTFPGYWFTVFLIEKLGRFKIQLIGFFMMSVFMAVLGVRYNYLKNHPAEFAVLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAASGKAGAIVGAFGVQNYTLDGNPSKIQKAMIFLAFTNMLGFVFTFLVTETKGRSLEEISGEDGRAGDNDGQMPVRAMGKPGDRNSQSAIGHFKLVSIVCKSWGHHTFSCDFVANLVCKILSNVKISLRFCLGVIRYSGGAQVVHRGSFACIGGRDKLFLAIWILNHKEGSPYKVVSIYQRCRDWQLDNDQCLITIFDGSRI 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1448558 1452092 - Lsi05G000710.1 Lsi05g00071 662563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00071 588 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 124 456 - -
Lsi05g00071 588 SUPERFAMILY MFS general substrate transporter 9 446 IPR036259 -
Lsi05g00071 588 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 3 125 - -
Lsi05g00071 588 Gene3D Multidrug resistance protein D 62 127 - -
Lsi05g00071 588 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 3 125 - -
Lsi05g00071 588 Pfam Sugar (and other) transporter 22 122 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g00071 588 Pfam Sugar (and other) transporter 158 446 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g00071 588 CDD MFS_PhT 22 438 - -
Lsi05g00071 588 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 439 IPR020846 GO:0022857
Lsi05g00071 588 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 124 456 - -
Lsi05g00071 588 Gene3D MFS general substrate transporter like domains 128 461 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00071 Lsi-Chr5:1448558 Lsi05g01728 Lsi-Chr5:24728682 0 dispersed
Lsi05g00071 Lsi-Chr5:1448558 Lsi09g01236 Lsi-Chr9:19877147 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00071 K08176 - csv:101210631 828.165