Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00082 ATGTTGCCACCTGGCTTCTCCTCTTCGGTGCCAATGCTTCGAAAAGCCACCATTTTCTCTCTCTTTCCCCATATTTCTCTCTCCCTCTCTCTTGTTTATCCCCTTTTTCTTTCCTGTGGCACTCTATTCTGTCCCGATTCTTCCATTTTCTACCCTGACTACAATATAAGGAATGTGATTGCTCAGGCTGGACATATAGGAATAATCAATAGAAGGGTCCAAATCAACAATATCTGGAGGAGTTTACATTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACCAGTGGAGGGTGGAAAAGTGAAGACGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTCAATGGTCAAACAGTCTGCCTTTTTGGCATCTTTGATGAAACAGTTACTTCTTTGCACGTGGTTGCAGGTCACGGTGGATCCCGAGCTGCAGAGTTCTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCGAAATTTTTTATGGATACCAAATTAGCTATCAGTGAAACGTATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCAATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACATGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTTGGTAACAAGATGTTGAAGCAGTTTGTTGTTGCGGATCCCGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGCTGCTCGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAATGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCTGAGGCAGCTGCTCGGAAGCTAACTGAAGTAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCACGACAAGGCAGGTCCTGCTGCGGATACTCGAGAAAACAACTAA 1239 45.04 MLPPGFSSSVPMLRKATIFSLFPHISLSLSLVYPLFLSCGTLFCPDSSIFYPDYNIRNVIAQAGHIGIINRRVQINNIWRSLHSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVNGQTVCLFGIFDETVTSLHVVAGHGGSRAAEFLKDHLFENLMKHPKFFMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEVAFTRGSADNITCIVVKFHHDKAGPAADTRENN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1550775 1555557 - Lsi05G000820.1 Lsi05g00082 662574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00082 412 MobiDBLite consensus disorder prediction 111 130 - -
Lsi05g00082 412 ProSiteProfiles PPM-type phosphatase domain profile. 141 397 IPR001932 -
Lsi05g00082 412 SMART PP2C_4 131 395 IPR001932 -
Lsi05g00082 412 Gene3D - 133 402 IPR036457 -
Lsi05g00082 412 SUPERFAMILY PP2C-like 137 398 IPR036457 -
Lsi05g00082 412 Pfam Protein phosphatase 2C 178 390 IPR001932 -
Lsi05g00082 412 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 93 408 - -
Lsi05g00082 412 PANTHER ALPHABET, ISOFORM E-RELATED 93 408 - -
Lsi05g00082 412 MobiDBLite consensus disorder prediction 112 130 - -
Lsi05g00082 412 CDD PP2Cc 143 397 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01361 Lsi-Chr4:21361522 Lsi05g00082 Lsi-Chr5:1550775 6.71E-112 dispersed
Lsi05g00082 Lsi-Chr5:1550775 Lsi08g00511 Lsi-Chr8:13025417 1.57E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00082 K17506 - csv:101203681 669.463