Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00087 ATGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCTGGAACTTCCTCCGACGGCCGGTCGCCGGAATGTGCGATCCCACTACCATGATTAAAACCAAGAATGCACGCCGGAGACGGATGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAAGGTGCACGCGGCAGAGGAAGGTGAGGGCGACGAATTAGGCGATAATAGAGTTTCCGAATCGAATTGTGATCAAGTACTAATCTCTGAGAAGGAAACGATTTCGGCGTTGGATTGTGGAGTGTACAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGGCGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGACGGACACGGCGGCGCTCAGGTGGCTCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGTAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCGCGATGAAGACGGTCGGCTCGGCGGTTGTTGCGGCGGTGATCGGAAATGAGGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGAATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCGGGTGGGAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGCGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTCACCAAGCGAACGGACAACGATGAGTTCCTCATACTAGGAAGCGATGGTCTGTGGGACGTTGTTTCAAACGAAATTGCCTGCAACATAGTGAGAAGATGTTTTGGGGGCAAATTGAAGAGGGTTTCATTGAAGGTGGCAAACGACAGCCATGTCGCCGAAGCTGCAGCAGTGTTGGCGGAGCTCGCGGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATCTGAGGAAACCAAACCGTTCCTCTCCATGA 1107 52.03 MHSLNKLQLSNSSWNFLRRPVAGMCDPTTMIKTKNARRRRMRVRKLRYKWQRKVHAAEEGEGDELGDNRVSESNCDQVLISEKETISALDCGVYSEMSIIGRRKEMEDEVRVELGLTAINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGRLMERCFERMDDEVNSGAAAMKTVGSAVVAAVIGNEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKLKRVSLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNRSSP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1595355 1598064 - Lsi05G000870.1 Lsi05g00087 662579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00087 368 Gene3D - 89 367 IPR036457 -
Lsi05g00087 368 CDD PP2Cc 93 360 IPR001932 -
Lsi05g00087 368 SMART PP2C_4 80 358 IPR001932 -
Lsi05g00087 368 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Lsi05g00087 368 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 34 362 - -
Lsi05g00087 368 SUPERFAMILY PP2C-like 85 362 IPR036457 -
Lsi05g00087 368 PANTHER ALPHABET, ISOFORM E-RELATED 34 362 - -
Lsi05g00087 368 Pfam Protein phosphatase 2C 95 353 IPR001932 -
Lsi05g00087 368 ProSiteProfiles PPM-type phosphatase domain profile. 93 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00358 Lsi-Chr3:4227142 Lsi05g00087 Lsi-Chr5:1595355 7.61E-76 dispersed
Lsi05g00087 Lsi-Chr5:1595355 Lsi07g00587 Lsi-Chr7:6239778 1.72E-73 dispersed
Lsi05g00087 Lsi-Chr5:1595355 Lsi02g01331 Lsi-Chr2:17811663 3.50E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00087 K14497 - csv:101214188 594.349