Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00093 ATGTCGTCTACGCTGCTAGAGGTAACCCGCGCCTCACACGAGGAGGTGGAGCGATTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGAGATTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCACAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAACGAGGATGATGGACTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTGTACAACCAGTATATTAATTCAAAATTTGGAGAGGCTATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATTTCTCGGAAACTAAAAATTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCTAAGGTTGAATCTGAATTTGAAGAGCGATGGACTATTGGTACAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGCCATGATTCCGAGCAGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTGGGTCCTGAAAGGTTAAAGGAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACATTTCGCAAAACTGTCTTGGCAACCTATTCAGAATGGGGCAGCTGTGGCTTCACAGAACAATGAAAATTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGCGACCTTCTGGACGAGACAATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAGGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAATGGCGACCAGATCTGGAGGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGATTGATATAA 1527 43.48 MSSTLLEVTRASHEEVERFERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKISRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGTIEGWENTGQENGHDSEQHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSWQPIQNGAAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1658072 1666969 + Lsi05G000930.1 Lsi05g00093 662585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00093 508 Coils Coil 352 379 - -
Lsi05g00093 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 174 IPR031774 -
Lsi05g00093 508 MobiDBLite consensus disorder prediction 362 381 - -
Lsi05g00093 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lsi05g00093 508 Pfam Replication stress response SDE2 C-terminal 223 303 - -
Lsi05g00093 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Lsi05g00093 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Lsi05g00093 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Lsi05g00093 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00093 Lsi-Chr5:1658072 Lsi09g01821 Lsi-Chr9:27015161 2.04E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00093 K12827 - csv:101205916 955.281