Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00099 ATGGGTTACGGCAGGCTCAACGAAACCGATCCCGGCGGCACTTCCTCCGCCGCCGCCGCTTTCCAACTCTCTGACCACCCTGTTTCATTTCCCACTTCCAACCGAAGGAGAACACGCCTTCTCGTTATTTCCATTCTCTCTGTCCTTCTCATCGTCGCCGCCGCCGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCTGACCCAAATCTTCCTCGAAAACCGACTCAGGCTATTTCCAAGGCTTGTAGTCGAACTCGCTTCCCGACTCTCTGTGTTAACTCGCTCCTTGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTTAATATCACTCTCCAGCATCTCAATAAAGCTCTGTATTTTTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGTTCCGCTTACGATGCCTGTCTTGAACTCCTTGACGACTCCGTTGACGCTCTTACACGTTCCTTGCAGTCCGTCGCGCCTTCTTCTTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGATATCATTACTTGGCTTAGCGCTGCCCTTACTAATCAAGACACATGTACGGACGGATTCTCTGAACTCTCCGGCACTGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTCGTTAGCAATTGCTTGGCGTTGTTTTCCGGTAGTGTAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCAGAGACGACGAGGATACTTCCGGTAACTTCCCTGGGTGGATGAGTCGGAGAGAGAGGAGGTTACTGACGTTGCCGGTGGGGGTGTTACAGGCCGATATTGTGGTTTCTCAGAATGGTAGTGGAACGGTGAAGACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAGCAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAGAATCTGAAGGTGGGGAGGAAGAAAACGAACCTCATGTTTGTTGGGGACGGCAAGGGTAAAACTGTCATTTCGGGTGATAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCATCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGAGACATAACATTTGAGAATTGGGCTGGACCGGGGCGGCACCAGGCGGTAGCGCTTCGAGTTGGTGCCGACCACGCGGTGGTATACCGCTGCAACATAATCGGATATCAAGACACTCTGTACGTTCATTCGAACCGTCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTCATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACTGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTGCCAGCCTCGGATCTAGCATCGTCTAACAACACAAACCCGACGTATCTGGGCCGTCCGTGGAAATTATATTCTAGAACCGTGTACATGCTATCGTACATAGGAAGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGTGGGGCTGTAGGCCAGAGAGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTGGAAGCGAATCTTCCTAAGCGTGGGATTTGGCTTGCCAACATACATTTCACAGAATACCTGATTCTGTTCTTGCAAAATCACACCATTTGGATCGAGCCTGCACGATCGACAGACGAATCTGTATGCAATTCGCTTCTGGAAAACGGATGGACTATAGGAGCAAAATCACTGCGGAGTTCACCGATTGACGCTTCTTTAGAGTGA 1926 51.14 MGYGRLNETDPGGTSSAAAAFQLSDHPVSFPTSNRRRTRLLVISILSVLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYFSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDIITWLSAALTNQDTCTDGFSELSGTVKNQMADKLHNLSELVSNCLALFSGSVTSDFSGVPIQNKRRLMNARDDEDTSGNFPGWMSRRERRLLTLPVGVLQADIVVSQNGSGTVKTIAEAIKKAPQYSSRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGDKSVFDNVTTFHTASFAATGAGIILRDITFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNNTNPTYLGRPWKLYSRTVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEANLPKRGIWLANIHFTEYLILFLQNHTIWIEPARSTDESVCNSLLENGWTIGAKSLRSSPIDASLE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1736313 1745220 + Lsi05G000990.1 Lsi05g00099 662591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00099 641 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857
Lsi05g00099 641 PANTHER PECTINESTERASE 29 577 - -
Lsi05g00099 641 SUPERFAMILY Pectin lyase-like 287 576 IPR011050 -
Lsi05g00099 641 Pfam Pectinesterase 290 577 IPR000070 GO:0030599|GO:0042545
Lsi05g00099 641 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Lsi05g00099 641 CDD PMEI-like_3 87 237 - -
Lsi05g00099 641 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857
Lsi05g00099 641 Gene3D - 285 591 IPR012334 -
Lsi05g00099 641 PANTHER PECTINESTERASE 29 577 - -
Lsi05g00099 641 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Lsi05g00099 641 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Lsi05g00099 641 SMART PMEI_2 79 235 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00099 Lsi-Chr5:1736313 Lsi06g00089 Lsi-Chr6:897490 9.09E-107 dispersed
Lsi05g00099 Lsi-Chr5:1736313 Lsi09g00023 Lsi-Chr9:197201 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00099 - - csv:101214987 1045.42