Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00102 ATGGATTTGGACAGTATCGAGTGTGTATCTTCTTCAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCACAATCTCATCATCTTCCCGAGTTGTCCGCAGCGAAGCCTCGTTATGGAAACAACAATAGCGCTGTGAATGGCCCCACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACGTTATGTTCTACTTGTAAAACGAGGGTTCATAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGATGCTTAGCACTGGAAAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTCCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTTCAGACCCTATAGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTTAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCTTTCCTCCGTTTCATGGGCGATGAGAATGAGGCACGAACCTACAGCTACAGCCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCGCGAAGTATTAGAGACAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATCATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACCTTTGTAGCTAA 996 45.68 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSHHLPELSAAKPRYGNNNSAVNGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEGLCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1766969 1771231 - Lsi05G001020.1 Lsi05g00102 662594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00102 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Lsi05g00102 331 SUPERFAMILY RING/U-box 59 109 - -
Lsi05g00102 331 CDD RING-HC_SIAHs 68 106 - -
Lsi05g00102 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Lsi05g00102 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
Lsi05g00102 331 CDD Sina 184 312 - -
Lsi05g00102 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Lsi05g00102 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Lsi05g00102 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Lsi05g00102 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi05g00102 331 SUPERFAMILY TRAF domain-like 123 315 - -
Lsi05g00102 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 122 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00102 Lsi-Chr5:1766969 Lsi09g01813 Lsi-Chr9:26927415 0 dispersed
Lsi05g00102 Lsi-Chr5:1766969 Lsi05g00103 Lsi-Chr5:1771572 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00102 K04506 - csv:105434867 703.745