Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00103 | ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCAACTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTACTACCTACCCCAATTCCCACTGCACCAACCGTAACAAACCCAACGACCTCTTTCTCAACTCACCTTACCACTTGGTCTCTTTCAAGCCCGTTTCACTCAGAGGCGACTTCGTCGATAACGGGACTCAACCCCCCGATCATCGGAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTGAGTAAGAGGGGTTGTTTTATGAGCACTTATGGGGACCCGCCGGAGGTATGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGTTTGAATGGTCGTGGAGGCGGCGGTGGCAACTCCAATTCTGGTTCTGGTGGTGGGTTTTCCTCGAACTCCAATGATGAGTGTTGGGGTGGCTCTAGTTTGGGACCTAATTTTCCTACCCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAGAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCTCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGAAGCTGTCGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGACCAACAGGCTCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAGCTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAACGTGCCTGAGAAGGGTGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGACGCCATGGTTACTTCTTCTCTGTTGGAGACCGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCTTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATATTCCTGATGTTAGAACAGGTGAGGATATAATTGATGCTGTCATTGTTGATGAAGAATCCATTGGGTTAGACAGCCCTGGTTCTGGCACCAAAATTCTTTATGGAAAGGGTGCGTTGGATCGCTATCTTTCAGGACAAAAGGCAACAAGTCAGAATTCAGAAAGAGAGCCAGAACCTGAAGGTGAAACCGATCTTCCTTCAGTTGTTGCCAGCGGCATTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATTCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCTCGTAATGGGAGCAATAATAGCGGTATAGCAGTCCCCACTGCGACTGCACCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTCCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTACAGACCCTATAGTTGCCCATATGCTGGGTCGGAATGCGCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACAGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTCACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCCCGAACATACAGCTACAGTCTTGAGGTTGGTGGATACGGGCGAAAATTAATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGAGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA | 2505 | 45.55 | MAAAALRSRSSKEVANLTLSRCRHCISNSIHATTYPNSHCTNRNKPNDLFLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKLSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGNSNSGSGGGFSSNSNDECWGGSSLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKAEAVDDDKVELEKSNILLMGPTGSGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDIPDVRTGEDIIDAVIVDEESIGLDSPGSGTKILYGKGALDRYLSGQKATSQNSEREPEPEGETDLPSVVASGIIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGIAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECAAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 834 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1771572 | 1786465 | - | Lsi05G001030.1 | Lsi05g00103 | 662595 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00103 | 834 | Gene3D | - | 157 | 236 | IPR027417 | - | |
Lsi05g00103 | 834 | Gene3D | - | 237 | 405 | IPR027417 | - | |
Lsi05g00103 | 834 | CDD | RING-HC_SIAHs | 571 | 609 | - | - | |
Lsi05g00103 | 834 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 237 | 436 | - | - | |
Lsi05g00103 | 834 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 435 | 506 | - | - | |
Lsi05g00103 | 834 | SUPERFAMILY | TRAF domain-like | 626 | 818 | - | - | |
Lsi05g00103 | 834 | Gene3D | - | 406 | 456 | - | - | |
Lsi05g00103 | 834 | MobiDBLite | consensus disorder prediction | 531 | 553 | - | - | |
Lsi05g00103 | 834 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 161 | 447 | IPR027417 | - | |
Lsi05g00103 | 834 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 682 | 814 | IPR008974 | GO:0005515 | |
Lsi05g00103 | 834 | ProSiteProfiles | Zinc finger RING-type profile. | 573 | 609 | IPR001841 | - | |
Lsi05g00103 | 834 | Pfam | Seven in absentia protein family | 615 | 814 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Lsi05g00103 | 834 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 626 | 681 | IPR013083 | - | |
Lsi05g00103 | 834 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 536 | 625 | IPR013083 | - | |
Lsi05g00103 | 834 | SUPERFAMILY | RING/U-box | 560 | 612 | - | - | |
Lsi05g00103 | 834 | ProSiteProfiles | Zinc finger SIAH-type profile. | 626 | 686 | IPR013010 | GO:0008270 | |
Lsi05g00103 | 834 | PANTHER | CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL | 3 | 237 | - | - | |
Lsi05g00103 | 834 | PANTHER | CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL | 435 | 506 | - | - | |
Lsi05g00103 | 834 | Pfam | AAA domain (Cdc48 subfamily) | 240 | 400 | IPR003959 | GO:0005524|GO:0016887 | |
Lsi05g00103 | 834 | PANTHER | CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL | 237 | 436 | - | - | |
Lsi05g00103 | 834 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 3 | 237 | - | - | |
Lsi05g00103 | 834 | CDD | Sina | 687 | 815 | - | - | |
Lsi05g00103 | 834 | MobiDBLite | consensus disorder prediction | 122 | 146 | - | - | |
Lsi05g00103 | 834 | MobiDBLite | consensus disorder prediction | 479 | 500 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01939 | Lsi-Chr1:24857853 | Lsi05g00103 | Lsi-Chr5:1771572 | 1.56E-06 | dispersed | |
Lsi05g00103 | Lsi-Chr5:1771572 | Lsi09g01813 | Lsi-Chr9:26927415 | 3.81E-174 | dispersed | |
Lsi09g00936 | Lsi-Chr9:11793842 | Lsi05g00103 | Lsi-Chr5:1771572 | 4.38E-24 | dispersed | |
Lsi05g00102 | Lsi-Chr5:1766969 | Lsi05g00103 | Lsi-Chr5:1771572 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00103 | K04506 | - | csv:101215696 | 670.618 |