Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00103 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCAACTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTACTACCTACCCCAATTCCCACTGCACCAACCGTAACAAACCCAACGACCTCTTTCTCAACTCACCTTACCACTTGGTCTCTTTCAAGCCCGTTTCACTCAGAGGCGACTTCGTCGATAACGGGACTCAACCCCCCGATCATCGGAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTGAGTAAGAGGGGTTGTTTTATGAGCACTTATGGGGACCCGCCGGAGGTATGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGTTTGAATGGTCGTGGAGGCGGCGGTGGCAACTCCAATTCTGGTTCTGGTGGTGGGTTTTCCTCGAACTCCAATGATGAGTGTTGGGGTGGCTCTAGTTTGGGACCTAATTTTCCTACCCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAGAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCTCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGAAGCTGTCGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGACCAACAGGCTCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAGCTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAACGTGCCTGAGAAGGGTGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGACGCCATGGTTACTTCTTCTCTGTTGGAGACCGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCTTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATATTCCTGATGTTAGAACAGGTGAGGATATAATTGATGCTGTCATTGTTGATGAAGAATCCATTGGGTTAGACAGCCCTGGTTCTGGCACCAAAATTCTTTATGGAAAGGGTGCGTTGGATCGCTATCTTTCAGGACAAAAGGCAACAAGTCAGAATTCAGAAAGAGAGCCAGAACCTGAAGGTGAAACCGATCTTCCTTCAGTTGTTGCCAGCGGCATTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATTCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCTCGTAATGGGAGCAATAATAGCGGTATAGCAGTCCCCACTGCGACTGCACCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTCCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTACAGACCCTATAGTTGCCCATATGCTGGGTCGGAATGCGCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACAGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTCACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCCCGAACATACAGCTACAGTCTTGAGGTTGGTGGATACGGGCGAAAATTAATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGAGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2505 45.55 MAAAALRSRSSKEVANLTLSRCRHCISNSIHATTYPNSHCTNRNKPNDLFLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKLSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGNSNSGSGGGFSSNSNDECWGGSSLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKAEAVDDDKVELEKSNILLMGPTGSGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDIPDVRTGEDIIDAVIVDEESIGLDSPGSGTKILYGKGALDRYLSGQKATSQNSEREPEPEGETDLPSVVASGIIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGIAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECAAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1771572 1786465 - Lsi05G001030.1 Lsi05g00103 662595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00103 834 Gene3D - 157 236 IPR027417 -
Lsi05g00103 834 Gene3D - 237 405 IPR027417 -
Lsi05g00103 834 CDD RING-HC_SIAHs 571 609 - -
Lsi05g00103 834 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 237 436 - -
Lsi05g00103 834 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 435 506 - -
Lsi05g00103 834 SUPERFAMILY TRAF domain-like 626 818 - -
Lsi05g00103 834 Gene3D - 406 456 - -
Lsi05g00103 834 MobiDBLite consensus disorder prediction 531 553 - -
Lsi05g00103 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 447 IPR027417 -
Lsi05g00103 834 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 682 814 IPR008974 GO:0005515
Lsi05g00103 834 ProSiteProfiles Zinc finger RING-type profile. 573 609 IPR001841 -
Lsi05g00103 834 Pfam Seven in absentia protein family 615 814 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi05g00103 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 681 IPR013083 -
Lsi05g00103 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 625 IPR013083 -
Lsi05g00103 834 SUPERFAMILY RING/U-box 560 612 - -
Lsi05g00103 834 ProSiteProfiles Zinc finger SIAH-type profile. 626 686 IPR013010 GO:0008270
Lsi05g00103 834 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 237 - -
Lsi05g00103 834 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 435 506 - -
Lsi05g00103 834 Pfam AAA domain (Cdc48 subfamily) 240 400 IPR003959 GO:0005524|GO:0016887
Lsi05g00103 834 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 237 436 - -
Lsi05g00103 834 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 237 - -
Lsi05g00103 834 CDD Sina 687 815 - -
Lsi05g00103 834 MobiDBLite consensus disorder prediction 122 146 - -
Lsi05g00103 834 MobiDBLite consensus disorder prediction 479 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01939 Lsi-Chr1:24857853 Lsi05g00103 Lsi-Chr5:1771572 1.56E-06 dispersed
Lsi05g00103 Lsi-Chr5:1771572 Lsi09g01813 Lsi-Chr9:26927415 3.81E-174 dispersed
Lsi09g00936 Lsi-Chr9:11793842 Lsi05g00103 Lsi-Chr5:1771572 4.38E-24 dispersed
Lsi05g00102 Lsi-Chr5:1766969 Lsi05g00103 Lsi-Chr5:1771572 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00103 K04506 - csv:101215696 670.618