Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00113 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACCAAGCTCCACCATGCCTCCGCCTCCAAACCCACCAAAACAACTCAGCTCACTCTCAGAAGAAAAACCAGTTGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGGGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTTAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGTGTAGCAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAAGCGGCTTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCAACTGTTGCATTCATACGAAATGATGTGCTGTTCATTTCACATGTCGGCGACTCTTGTATTGCATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAATTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGTGGGGACATCTCTGTATCGCGTGCATTTGGCGACATACGATTCAAGACAAAGAAAAGCGATGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTCCCAAGTTACGCTTGGATCAAATGTCGAGTTTATACTGATGGCATCGGATGGCCTATGGGATTACATGAAAAGGTCTGTTGGGATTCATTTTAGTCCCTCAGTCGTTTCTAGGATTCAATCATTATGTTCAGAACTAGCTTGTGAAGCCCTTGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCGAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAACTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTCGGTATTTGGTGGGCATCCTCTAGTTTCTCTCTTTAA 1116 44.71 MALLSPRLHRFRLTKLHHASASKPTKTTQLTLRRKTSCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGDFEVIKAALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHVGDSCIALSRSGGAQVLTNSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKSDVQFNGDLVTASPEISQVTLGSNVEFILMASDGLWDYMKRSVGIHFSPSVVSRIQSLCSELACEALAQAALDKGSQDNISIIMADLGRTDWRNLPLKQDNVIFELAQAFATIGLVSFGIWWASSSFSL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1856944 1861887 + Lsi05G001130.1 Lsi05g00113 662605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00113 371 Gene3D - 56 335 IPR036457 -
Lsi05g00113 371 CDD PP2Cc 56 329 IPR001932 -
Lsi05g00113 371 Pfam Protein phosphatase 2C 59 322 IPR001932 -
Lsi05g00113 371 PANTHER PROTEIN PHOSPHATASE 2C 57 6 366 - -
Lsi05g00113 371 SMART PP2C_4 47 327 IPR001932 -
Lsi05g00113 371 ProSiteProfiles PPM-type phosphatase domain profile. 57 329 IPR001932 -
Lsi05g00113 371 SUPERFAMILY PP2C-like 54 330 IPR036457 -
Lsi05g00113 371 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Lsi05g00113 371 PANTHER PROTEIN PHOSPHATASE 2C 6 366 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00113 Lsi-Chr5:1856944 Lsi02g02662 Lsi-Chr2:33098364 8.42E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00113 K04457 - csv:101218076 610.527