Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00137 ATGGTGCTTAATCTTGTCAAACCGTCTTTCCTCAAATGGATATTATTCAGTTGCTTGCTTTCTTTCTCTCTGGGTCTGAAACAGCCTAATCAAGTCTGTGATTCAAAAGATTTACTGGCATTGAGGGGCTTTGTGAATAGCCTTGCCAATAGTCCTGTTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTGGATTGTGGACATGATGGCAACAGATCGCTTACTAACAGAGTTACCAGGTTAGAACTGCCTAATATGAATCTAAAAGGCAAGATTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAATTCTCAAGTCTGAGGCAACTCCAGGTTTTGGATTTGAGTTACAATAAACTGTCAGGACCAGTCACCAATGCAACCTCAGGATTGAAATCTGTTCATGTTTTGAATATTTCCAGCAATTCATTCATTGGGGATTTTCCCCAGCTTGTTGGATTTCAAAAGCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCCAGTTTTCTTCACAGATTTGCAATTCCTCCAACATGATTCAGGTTGTTGATATTTCACTGAACCGAATATCCGGCAATCTTCAAGGTGTGGACAATTGCAGCAAATCTCTCAAACATTTCCGTGCAGATAGTAATTTACTTACCGGCCATCTGCCAGATTCGTTGTATTCATTATCATCCATAGAGTATTTCTCAATCCCCGGGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAGTTTTCTGGAGAACTTCCAAATGTGTTTGGTAATTTTTCAGAATTACAGGAGTTAGTTGTACACTCCAACTTGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGAAATAATTCTTTAACCGGTACTATAGATCTCAATTTTTCTAGGCTACCAAATCTTCAAATGCTTGATCTAGCCTCGAATCACTTTTCCGGGCCCCTACCAAATTCTCTATCTGATTGCCGTGAACTGAAAACTCTTAGCCTTGCCAAAAACAAGTTAACTGGTCAAATTCCTCGAGATTATGCAAACCTTTCCTCTCTGTCCTTTCTATCTTTATCAAACAACAGTATCATAGACTTGAGTGGTGCACTATCTATTTTACAAAATTGCAGAAACCTGACTGTTCTTATTCTTACAAAGAACTTCCGTAATGAGGAACTTCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACAAATCCCAGGTTGGTTAATAGGTTGCAAGAAATTAAGCATCCTTGACTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAGAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACGGCAGCTTGTCGGGTTCGACATCATCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCCACTGGTTTGCAATACAACCAAGCGTCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTTCCGGAAATTGGCAGATTAAAATGGCTGCATGTCTTGGATGTGAGTAGGAACAATATTACTGGCTCCATACCGAGCACCATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACATTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGATGGACCAATTCCTAATGGAGGGCAATTCCTAAGCTTTCCAAGCTCCAGCTTTGATGGTAATGTAGGACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGAGTTAGAAACAAAACCCGAAACCAACAATTATTCAAAGAGAAAAGTTAATAGAAGCATCATTCTTTGCCTTACAGTCGGTGCGGCTGCAGCAATCCTCCTGCTTCTTACAGTGGTTCTACTCAAAATGTCCAGGAAAGATGTTGGAGATCGACGAAATAACAGGTTTGATGAGGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTAGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTCTCTCGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGGTTGTTGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCTGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATCCACCGAGATGTAAAATCAAGCAACATACTTCTAGACGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACTTGCAGGGGTGATGTTTACAGCTTTGGCGTTGTTCTTCTTGAGCTTCTTACCGGTCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGTGATTCAAAAAAAATCAGAGAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGGCACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATCGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 3144 40.65 MVLNLVKPSFLKWILFSCLLSFSLGLKQPNQVCDSKDLLALRGFVNSLANSPVLSVWLNESNCCNWDGVDCGHDGNRSLTNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTEFSSLRQLQVLDLSYNKLSGPVTNATSGLKSVHVLNISSNSFIGDFPQLVGFQKLVAFNISNNSFTGQFSSQICNSSNMIQVVDISLNRISGNLQGVDNCSKSLKHFRADSNLLTGHLPDSLYSLSSIEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELQELVVHSNLFSGLLPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPNLQMLDLASNHFSGPLPNSLSDCRELKTLSLAKNKLTGQIPRDYANLSSLSFLSLSNNSIIDLSGALSILQNCRNLTVLILTKNFRNEELPQSETVFNNLMLLAFGNCGLRGQIPGWLIGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISRNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDVSRNNITGSIPSTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLDGPIPNGGQFLSFPSSSFDGNVGLCGEIDNPCHSVDELETKPETNNYSKRKVNRSIILCLTVGAAAAILLLLTVVLLKMSRKDVGDRRNNRFDEEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWGTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2036081 2039224 - Lsi05G001370.1 Lsi05g00137 662629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00137 1047 Gene3D Transferase(Phosphotransferase) domain 1 847 1046 - -
Lsi05g00137 1047 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 273 435 - -
Lsi05g00137 1047 PRINTS Leucine-rich repeat signature 600 613 - -
Lsi05g00137 1047 PRINTS Leucine-rich repeat signature 493 506 - -
Lsi05g00137 1047 PANTHER PHYTOSULFOKINE RECEPTOR 2 559 611 - -
Lsi05g00137 1047 Pfam Leucine rich repeat 298 357 IPR001611 GO:0005515
Lsi05g00137 1047 Pfam Leucine rich repeat 82 141 IPR001611 GO:0005515
Lsi05g00137 1047 Gene3D Ribonuclease Inhibitor 367 677 IPR032675 -
Lsi05g00137 1047 Pfam Protein kinase domain 772 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00137 1047 ProSiteProfiles Leucine-rich repeat profile. 394 416 IPR001611 GO:0005515
Lsi05g00137 1047 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
Lsi05g00137 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Lsi05g00137 1047 SMART LRR_typ_2 296 319 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 344 368 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 600 624 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 128 151 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 104 127 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 392 415 IPR003591 -
Lsi05g00137 1047 SMART LRR_typ_2 490 514 IPR003591 -
Lsi05g00137 1047 SUPERFAMILY RNI-like 234 639 - -
Lsi05g00137 1047 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Lsi05g00137 1047 ProSiteProfiles Leucine-rich repeat profile. 602 625 IPR001611 GO:0005515
Lsi05g00137 1047 SUPERFAMILY Protein kinase-like (PK-like) 752 1042 IPR011009 -
Lsi05g00137 1047 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 613 1044 - -
Lsi05g00137 1047 SMART serkin_6 771 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00137 1047 Gene3D Ribonuclease Inhibitor 295 366 IPR032675 -
Lsi05g00137 1047 PANTHER PHYTOSULFOKINE RECEPTOR 2 273 435 - -
Lsi05g00137 1047 CDD STKc_IRAK 777 1038 - -
Lsi05g00137 1047 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 156 - -
Lsi05g00137 1047 SUPERFAMILY L domain-like 32 314 - -
Lsi05g00137 1047 Gene3D Phosphorylase Kinase; domain 1 740 846 - -
Lsi05g00137 1047 PANTHER PHYTOSULFOKINE RECEPTOR 2 31 156 - -
Lsi05g00137 1047 PANTHER PHYTOSULFOKINE RECEPTOR 2 613 1044 - -
Lsi05g00137 1047 Pfam Leucine Rich Repeat 602 623 IPR001611 GO:0005515
Lsi05g00137 1047 Pfam Leucine Rich Repeat 492 511 IPR001611 GO:0005515
Lsi05g00137 1047 ProSiteProfiles Protein kinase domain profile. 771 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00137 1047 PANTHER PHYTOSULFOKINE RECEPTOR 2 446 515 - -
Lsi05g00137 1047 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 446 515 - -
Lsi05g00137 1047 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 559 611 - -
Lsi05g00137 1047 Gene3D Ribonuclease Inhibitor 220 294 IPR032675 -
Lsi05g00137 1047 Gene3D Ribonuclease Inhibitor 150 219 IPR032675 -
Lsi05g00137 1047 Gene3D Ribonuclease Inhibitor 34 149 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02638 Lsi-Chr2:32806286 Lsi05g00137 Lsi-Chr5:2036081 0 dispersed
Lsi05g00137 Lsi-Chr5:2036081 Lsi11g00025 Lsi-Chr11:257189 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83624 PF00069 Pkinase 8.60E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00137 - - cmo:103496072 1925.98