Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00144 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGGTGTCTAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTATCGAGCTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACATTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCCAGGCGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGGAGAATTCCAAAGGCAGCAGAGGGAGACCACATTGCTGCAGGGTGGCCCCCGTGGCTGGCTGCTGTTGCTGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATACAGGGCTCGTGATCTTGACCAAAAGAAAATCGTTGCTTTGAAGAAAGTAAGATTTGACAACCTGGAACCTGAGAGCGTCCGTTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTAGGATGTCTTGCAGCCTCTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACACCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGTGTCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCAATCAAAATCAGCCACTAACTAGTCGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGATTGCCACATGCAACGATATTTAAGCCCCAACAGCCCTATAGACGTTGTGTTGCAGACACATTTAAGGATTTCCCTGCACCAGCTTTAGCTCTTATTGAAACGTTACTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGCGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGGCTTGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCAGTCCCTGCACCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAGTTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGACCCTCCCAAAATCTCAACCGGGACCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCCAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAGTCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGCAGGTTTCCTGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGTAGGCTCACACGACAAAGAGAGGAGCAGCACGAAAGACCCTATAGTTGTAAGTATGCGGTTGTCATTTTACTGTGCCTTACGTGCGTTTTTCTTGCATTGCCATGAATTTTTCTTAACTAGGATTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGGAAGGTTCAAGCTGATGGGAAACAGATGACGACGAATTCATTATTCGTCTCCGGTCGTTAA 2202 45.69 MGCVCCKPSAIEDSKESPRERVSSKTSSDLRVARVTSSSREEAYRAKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMGAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDINQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGLSSSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDPPKISTGTETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSTKDPIVVSMRLSFYCALRAFFLHCHEFFLTRIVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMTTNSLFVSGR 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2112119 2118785 - Lsi05G001440.1 Lsi05g00144 662636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00144 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Lsi05g00144 733 MobiDBLite consensus disorder prediction 12 27 - -
Lsi05g00144 733 PANTHER CYCLIN-DEPENDENT KINASE 1 610 - -
Lsi05g00144 733 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Lsi05g00144 733 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00144 733 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00144 733 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00144 733 CDD STKc_CDK9_like 131 415 - -
Lsi05g00144 733 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Lsi05g00144 733 PANTHER CELL DIVISION PROTEIN KINASE 1 610 - -
Lsi05g00144 733 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 604 621 - -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 604 631 - -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 444 471 - -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 444 566 - -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 35 49 - -
Lsi05g00144 733 MobiDBLite consensus disorder prediction 480 496 - -
Lsi05g00144 733 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Lsi05g00144 733 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00144 Lsi-Chr5:2112119 Lsi11g00052 Lsi-Chr11:603489 0 dispersed
Lsi06g00186 Lsi-Chr6:2017295 Lsi05g00144 Lsi-Chr5:2112119 2.90E-38 dispersed
Lsi10g00941 Lsi-Chr10:13838210 Lsi05g00144 Lsi-Chr5:2112119 8.23E-122 dispersed
Lsi05g00144 Lsi-Chr5:2112119 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83625 PF00069 Pkinase 3.90E-69 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00144 - - csv:101222182 1395.56