Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00155 ATGGAGAACCAGTTTATTTCAGTTTTCCAAAGAAACCCATGTTTCGATCAAAGGTTTATGGTCTTTATTTTGATCTTATTCTCTCTTACTTGCTCCTTCTCACCTTCCTATGGATATGACTCATTGGACCCTTATGCTAACATTACTATCACATGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTGTACAATTTCCAACTGTTTCGCCATGTGGAGCTGCCTGGTTGGAAACTTGGATGGTCATGGAAAGGTGAGGAAGTTATATGGAGTATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAAAGGAGGTGTGCTATCTTCGATGAGACAAGAGTCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTCGGAAAGTCTTCTGGAAAGGGTGTAGATAGCAAAATGCCTGCAAATTTCACACTGGGGCTTCCTGGATATACGTGTAGTGAACCATTTCAAGTCTCTCCAACCAAGTTTAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAACGTGACCTGTGTTTACTCCCAATTTCAATCATCACCGTCACCGAAGTGCTGCGTTTCATTGTCATCTTTCTACAACAGCACCATTGTCCCTTGCCCTCAATGCAGCTGTGGTTGCCAAGGGCTAAAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTGTTGCAACTTCCACATGAACATTACACTGCTGAAGTAGAACCGTTGGGGAATTCAGGAGATAGCAGTGCAATACACAAGTTACAAGCAGTAAGTAGTATAGCACAGTTTTTAGTTTTATTTGCTTATGGTTCTGATGATGAGAATATTAGTTGA 972 43.0 MENQFISVFQRNPCFDQRFMVFILILFSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKGEEVIWSMWGAEATQQGNCSKYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQESANYGAAFQMNVGKSSGKGVDSKMPANFTLGLPGYTCSEPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFQSSPSPKCCVSLSSFYNSTIVPCPQCSCGCQGLKGTKCVKSGETPSVLQLPHEHYTAEVEPLGNSGDSSAIHKLQAVSSIAQFLVLFAYGSDDENIS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2275670 2279488 + Lsi05G001550.1 Lsi05g00155 662647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00155 323 PANTHER COBRA-LIKE PROTEIN 6 26 272 - -
Lsi05g00155 323 PIRSF COBRA 13 295 IPR006918 GO:0010215|GO:0031225
Lsi05g00155 323 PANTHER PROTEIN COBRA 26 272 IPR006918 GO:0010215|GO:0031225
Lsi05g00155 323 Pfam COBRA-like protein 62 224 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00155 Lsi-Chr5:2275670 Lsi06g01402 Lsi-Chr6:24572437 9.33E-88 dispersed
Lsi05g00155 Lsi-Chr5:2275670 Lsi07g00951 Lsi-Chr7:11983015 2.87E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00155 - - csv:101210777 573.163