Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00158 | ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGTCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTCATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAATCGGAGCTTTTAGAATGGGACAAGAACGCTATAATCCGACGTGCTGCAATTCCAGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGTTAAGGAAGCTACTCGCTAAGACGAGTTCATCTCAACTTGAAAATGATGGTAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTACTGAAGGTGAGCAGTATGAGCTCCCTTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTAGATTCCAGCGTGGCAGACCTTGAAAGAGATGCTTATCCAGTTTTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCAGGATTCTTGCACGCGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGCTGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCTCATCTTCGTCGACTTAGTTCCACCAGGAGCGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTTGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGAAGCTAATGGCTCGTGTGAACATGAATCTAAATGCAAATTACAATGGTTGTAGACTTGTAGTTGTGGGCCTCGTGGCTAGAGATAAACATAAGGTCGAGGAAGTTAGGGAATACATCGACGACACCGAGGATTACGTCAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACACTGACCATTGCTTCATTTGCCATTGCTGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACAACACGGAGGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCGGCAGGATGTTTGTTGCTTTTCCTGCTTATTTTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA | 1422 | 45.5 | MGKGPFSFRRSSSRRRPKKAVQSSPSSSPQPPPQISTSSPPINNNGNGLVGGGAVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTSSSQLENDGNVSRGGKWLPVSEATEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALLGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSKLMARVNMNLNANYNGCRLVVVGLVARDKHKVEEVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYNTEGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS | 473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2309975 | 2320061 | - | Lsi05G001580.1 | Lsi05g00158 | 662650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00158 | 473 | CDD | Mrs2_Mfm1p-like | 68 | 470 | IPR039204 | - | |
| Lsi05g00158 | 473 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 377 | 473 | IPR039204 | - | |
| Lsi05g00158 | 473 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 5 | 347 | IPR039204 | - | |
| Lsi05g00158 | 473 | Gene3D | Magnesium transport protein CorA, transmembrane region | 139 | 363 | - | - | |
| Lsi05g00158 | 473 | Gene3D | - | 56 | 138 | - | - | |
| Lsi05g00158 | 473 | Gene3D | Magnesium transport protein CorA, transmembrane region | 371 | 404 | - | - | |
| Lsi05g00158 | 473 | Pfam | CorA-like Mg2+ transporter protein | 378 | 465 | IPR002523 | GO:0016020|GO:0030001|GO:0046873|GO:0055085 | |
| Lsi05g00158 | 473 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 409 | 460 | IPR045863 | - | |
| Lsi05g00158 | 473 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Lsi05g00158 | 473 | Coils | Coil | 237 | 271 | - | - | |
| Lsi05g00158 | 473 | PANTHER | MAGNESIUM TRANSPORTER MRS2-4-RELATED | 377 | 473 | - | - | |
| Lsi05g00158 | 473 | PANTHER | MAGNESIUM TRANSPORTER MRS2-4-RELATED | 5 | 347 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00068 | Lsi-Chr3:968110 | Lsi05g00158 | Lsi-Chr5:2309975 | 2.40E-08 | dispersed | |
| Lsi05g00158 | Lsi-Chr5:2309975 | Lsi08g00899 | Lsi-Chr8:17351890 | 1.37E-73 | dispersed | |
| Lsi05g00158 | Lsi-Chr5:2309975 | Lsi09g01276 | Lsi-Chr9:20562789 | 3.89E-20 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00158 | K16075 | - | csv:101203496 | 711.449 |