Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00160 | ATGGCTTCTCGTTTCTGGACCCAGGGTAGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGATTATGGTGAAGAGCTTGACGACATTCAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGAGGATTCTGAAGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACGGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCCTGCAGGAGAGCTTTGATAAGATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCAACTCTTTATATTAAAGCACTTGTTATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCGAAGAAGAAAATGAGTACTAGCAATTCCAAGGCCTTGAATTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTACCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGTTGGAGGAGGAGGAGGAGGATGATGATGATGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTTGATGAAGAAGAAGATCTAGATGATCCAAATCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAAGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGACGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTATAAGGGAACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGAGATTACAAAGCAGCTTCGAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGCGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGTAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTCATGGACATTCTGGTAACCCTCATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTATGTGATATTTATCACCATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATTTCAACGCAGATCCTTTTCAACCGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATCATGAAAAAACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCAAAGCGAAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAAAGACAAACGTTTACGGGTCCTCCTGAGAACGTTAGAGATCATGTTATGGCTGCTACCAGGGCCCTTCGTAAGGGTGATTTCCAGAAGGCTTTTGATGTCCTGGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGCGATGGAGTGCTGGAAATGGTTAAAGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACATACTCTTCGTCCTACGATTCTCTGAGTTCGGATCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGTATCGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGCTGGGATCAGCCAAGCGGTTGCGTCATTTTCCATGATGTTACACACACCCGATTACAGGGCCTGGCATTCCAATTGGCTGATAAGTTGTCAATCCTGGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGAGGATTAGATTTACCCATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGAGCTGGAGGAGGAGGGAGTAGCAGGTGGCCAGATAACACGTATAATCAAGGAAGGCATGGCGGTCCTAGTTCACGTGCAGGATATAGCAGTGGTGGGCGAGGCCAAGGTGGGGGTGGTGGATATTCTAGAGACCGGATGGGTCAGTCTCGAGGAGGCAATGCAGGATACCAAAGCACCCGTTATCAAGATGCCGCATATGGATCGGGGAGGACTGCTTATCAGTCGGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTCATGCTTAA | 2829 | 44.93 | MASRFWTQGSGSGSDSEAEESDYGEELDDIQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVITKYRENPEIEEEKADELEEEEEDDDDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPNQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVLASLDVWKLLRNRDGVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYAAGGAGGGGSSRWPDNTYNQGRHGGPSSRAGYSSGGRGQGGGGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSARGSQMDASARMVSLNKGVHA | 942 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2329953 | 2334659 | - | Lsi05G001600.1 | Lsi05g00160 | 662652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 839 | 901 | - | - | |
| Lsi05g00160 | 942 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 941 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
| Lsi05g00160 | 942 | Coils | Coil | 147 | 202 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 179 | 202 | - | - | |
| Lsi05g00160 | 942 | ProSiteProfiles | PCI domain profile. | 623 | 795 | IPR000717 | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 139 | 236 | - | - | |
| Lsi05g00160 | 942 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 885 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 914 | 932 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 914 | 942 | - | - | |
| Lsi05g00160 | 942 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 48 | 655 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
| Lsi05g00160 | 942 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 724 | 812 | - | - | |
| Lsi05g00160 | 942 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 941 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 852 | 867 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lsi05g00160 | 942 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
| Lsi05g00160 | 942 | SMART | PINT_4 | 724 | 812 | IPR000717 | - | |
| Lsi05g00160 | 942 | SUPERFAMILY | Winged helix DNA-binding domain | 721 | 794 | IPR036390 | - | |
| Lsi05g00160 | 942 | Pfam | PCI domain | 663 | 791 | IPR000717 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00160 | K03252 | - | csv:101203990 | 1639.78 |